Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre12g00257 | ATGGATTTGGTTCCAAGCAGTTTAATAAACACCACAACAATTGTACTCTTTCCTCTAATTCCCATATGTTTGTTTCTATTTATATTCTCAAAAATTGCTTATAGAAAAAACAAAGAGGCACCAATAGCCGAAGGTGCATGGCCAATACTTGGTCACCTCTCACTTTTTAGGGGCACACAATTACCCCATAGAGTCTTAGGTACCTTAGCTGATAAATATGGACCAATATTCACCATCAAACTTGGTTCAAAACATGCTTTAGTTATCAACAATTGGGAAATGGCCAAAGAATGTTTCACTACAAACGATATGGTTGTTTCGTCTCGTCCCAAGCTTGTCGCAACCGAACATTTGGCCTATAAAGGAGCCATGTTTGGTATTGCACCATATGGTCCTTATTGGCGCGAAATTCGAAAGATTACAACCTTAGAGGTCTTCTCGAATCGCAGAGTCGAACAACAACAACATGTTCGTGTTTCTGAAGTTCAAGCATCGATTAAAGAGCTCTTTGATGTTTGGTCTATAAAAAAGAATGAGTCATGTTCATCAAATTATGTGTTAGTAAACATGGATCAATGGTTTACACATTTAACATTCAACACGGTTCTTCGAATTGTTGTTGGGAAGAGATATTTTGGTGTAAAAATTATTGAAGAGGAAAAAAAAGCTCAAAGATGTGTGAACGCTTTGAAGGAGTTGATGCATTTATTTGGGATAGTCACGATGGGAGATGTTATTCCATGTTTGAAATTTTTTGATTTTGGTGGTCATGTGAAGGCTATGAAAAAAACTTCAAAGAAATTGGACAAAATTTTAGATGAGTGGTTGAAGGAGCATCGTCATAAAAGGACTTTAGGTGAAAATGTTGATCATCAAGGTCAAGACATCATGGATGTGTTGATTTCATTACTTGATGGAAGAACCATTGAAGGGTTTGATTCTGATACCATAATCAAAGCCACAATATTGACACTATTCACCGGAGGAAATGATACAACCGGTGTTACTCTTACGTGGGCACTATGTTTGCTATTGAAAAATCCGCTAGTAATGGAAAAAGCAAAAAAAGAACTTGACATCCAAATTGGTAAAGAAAGATGTATAAGTGAGTCAGATATCTGTAAATTGGTATACCTTCAAGCTATAATTAAAGAAACACTAAGATTATATCCACCAGCCCCTCTCTCGGGACCTCATGAATTCTCAGAGAATTGTACTTTAGGTGGTTATCATGTTAAAAAAGAAACTCGATTAATCACAAATCTTTGGAAGATACATACTGATCCTAGTATTTGGTCAGACCCGCTAGAGTTCAAACCAGAAAGATTCCTTACCACTCACAAAGATGTTGATGTTAGGGGTAAACATTTTGAGCTATTACCATTTGGAAGTGGTAGAAGAATGTGTCCCGGAATATCATTTGGACTTCAAATGTTGCATTTCTCTCTAGCTAATTTTTTACATTCCTTTGATATTTTAAATCCAACCTCTGAACTTGTTGACATGAATGAAGTCTTTGGATTAACAAACACCAAAGCTACTCCACTTGAAATTCTCATTAAACCACGCTTGTCTTTAAATTGTTATGAAAGCGTGTGA | 1599 | 0.3615 | MDLVPSSLINTTTIVLFPLIPICLFLFIFSKIAYRKNKEAPIAEGAWPILGHLSLFRGTQLPHRVLGTLADKYGPIFTIKLGSKHALVINNWEMAKECFTTNDMVVSSRPKLVATEHLAYKGAMFGIAPYGPYWREIRKITTLEVFSNRRVEQQQHVRVSEVQASIKELFDVWSIKKNESCSSNYVLVNMDQWFTHLTFNTVLRIVVGKRYFGVKIIEEEKKAQRCVNALKELMHLFGIVTMGDVIPCLKFFDFGGHVKAMKKTSKKLDKILDEWLKEHRHKRTLGENVDHQGQDIMDVLISLLDGRTIEGFDSDTIIKATILTLFTGGNDTTGVTLTWALCLLLKNPLVMEKAKKELDIQIGKERCISESDICKLVYLQAIIKETLRLYPPAPLSGPHEFSENCTLGGYHVKKETRLITNLWKIHTDPSIWSDPLEFKPERFLTTHKDVDVRGKHFELLPFGSGRRMCPGISFGLQMLHFSLANFLHSFDILNPTSELVDMNEVFGLTNTKATPLEILIKPRLSLNCYESV | 532 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre12g00257 | 532 | Pfam | Cytochrome P450 | 46 | 505 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Trre12g00257 | 532 | CDD | CYP82 | 74 | 523 | - | - | |
| Trre12g00257 | 532 | Gene3D | Cytochrome P450 | 29 | 523 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Trre12g00257 | 532 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 462 | 471 | IPR017972 | GO:0005506|GO:0016705 | |
| Trre12g00257 | 532 | PRINTS | E-class P450 group I signature | 337 | 363 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Trre12g00257 | 532 | PRINTS | E-class P450 group I signature | 197 | 215 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Trre12g00257 | 532 | PRINTS | E-class P450 group I signature | 317 | 334 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Trre12g00257 | 532 | PRINTS | E-class P450 group I signature | 469 | 492 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Trre12g00257 | 532 | PRINTS | E-class P450 group I signature | 421 | 445 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Trre12g00257 | 532 | PRINTS | E-class P450 group I signature | 459 | 469 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Trre12g00257 | 532 | PRINTS | E-class P450 group I signature | 70 | 89 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Trre12g00257 | 532 | PRINTS | E-class P450 group I signature | 94 | 115 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Trre12g00257 | 532 | PRINTS | E-class P450 group I signature | 380 | 398 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Trre12g00257 | 532 | PRINTS | P450 superfamily signature | 328 | 345 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Trre12g00257 | 532 | PRINTS | P450 superfamily signature | 381 | 392 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Trre12g00257 | 532 | PRINTS | P450 superfamily signature | 460 | 469 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Trre12g00257 | 532 | PANTHER | CYTOCHROME P450 82C3-RELATED | 20 | 529 | - | - | |
| Trre12g00257 | 532 | SUPERFAMILY | Cytochrome P450 | 46 | 523 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Trre12g00257 | 532 | FunFam | Cytochrome P450 82C4 | 31 | 521 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre12g00257 | Trre-Chr12 | 2163847 | 2166221 | Dispersed/Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre12g00257 | 9 | 524 | Cytochrome P450 | AT4G31940 | 47.238 | 1.76e-174 | 501 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre12g00257 | - | - | gmx:100805047 | 753.051 |