Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00256 ATGGATTTGGTTCTTGATTCCCAAAGTGCCATTACATTAGCATTCATTTCTATATTCTTCTTTTACTATTTGTTTTTCTATAGATCCTCAAGCAAAGAGGCTCCTATAGTTCAAGGGGCATGGCCAATAGTTGGTCACCTCCCACTATTGAGACCTTCAAATGTACCAACTCATAGAATCTTAGGTGAATTAGCCAACAAATATGGTTCCTTATTTTCCATTAAGCTTGGTTCCAAACGTGCTGTGGTAATAAGCAATTGGGAAATGGCTAAGGAATGTTTCACCAAATTTGACTTAGAAATTTCCAATCGCCCTAACCTTGAAGCAACTCAACATATGGCTTACAATGGAGCAATGTTTGTTTTAGCACCTCATGGTTCTTATTGGCGCCAAGTGCGAAAGATTACAACCGTAGAGATCTTTAGTCATCGTCGTATGGAACAACTACAACATTTTCGTGTTATGGTTGTTCGAGCTTCGATGAAAAATCTCTTCAAAGTTTGGTGTAGAAAAGAGAACAAGTCATCGGACTATGTGCCGATCGAGTTGAAGCAATTGTTTGGTGAAGTGAGTTCCAACATTGTTCTTCCAATGTTGGTCGGGAAGCGATATTTCGGGGCTACAAGTGTGATCGATAAGGAAGAAGCAGATCGATGTATAAAAACTTTGAAGGAGATGTTGCGGTTGGTAGGAGTATTCACAGTGGGAGATGCTCTTCCTTTTCTAAAATGGTTTGATTTTGGTGGCCATGTGAAGGCTATGAAAAAAACTTCAAAAGAGATGGACAAGATTTTAGGTGATTTGTTGGAGGATCACCGCCGCAATAGAAAGACTTCGAATGAGAAGGATGTTGATCCTAGTCATCAAGACTTCATGGACGTGATGCTTTCGTTGCTCGATGGATCGTCAATTGAAGGATTTGATTGTGACACCATAATCAAAGCCACAATATTGACAGTGTATGCGGGAGGAGTAGAAACAACAAGTGCCACTCTTGTATGGGCAATATCTTTGTTACTAAACAATCCTCATGTATTGGAAAAACTAAAAGAAGAACTTGACATTCAAGTTGGCAAAGAGAGGTGTGTAGAAGTGTCCGATATAGACAAATTGGTGTATCTTCAAGCTGTTATCAAAGAAACACTACGATTATATCCCGCCGATCCTCTCTCAGTACCACGTGAATTCTCAGAGGATTGTAATTTAGCTGGTTATGAGGTCAAAAAAGGAACTCGATTGATCCTTAATCTTTGGAAGATGCATATGGATCCTAATGTTTGGGTAGATCCGTTAGAATTCAAACCAGAAAGATTTCTTACAACTCATAAAGATATTGATGTTAAGGGTCGTCATTTTGAATTATTGCCATTTGGATGTGGTAGAAGAATTTGTCCTGGAATATCTTTTGGCCTTCAAGTGCTGCATTTAAATTTAGCAAGTTTTTTGCATTCTTTCAAAATCTCAAAACCTTCGGCTGAACCTATTGATATGACTGAAGCTTCTGGAATAACATACACCAAAGCAACTCCACTTGAGATTCTTGTTAAACCACGTTTCTCTTCTAATTATTATGATCTTAAGTGA 1584 0.3845 MDLVLDSQSAITLAFISIFFFYYLFFYRSSSKEAPIVQGAWPIVGHLPLLRPSNVPTHRILGELANKYGSLFSIKLGSKRAVVISNWEMAKECFTKFDLEISNRPNLEATQHMAYNGAMFVLAPHGSYWRQVRKITTVEIFSHRRMEQLQHFRVMVVRASMKNLFKVWCRKENKSSDYVPIELKQLFGEVSSNIVLPMLVGKRYFGATSVIDKEEADRCIKTLKEMLRLVGVFTVGDALPFLKWFDFGGHVKAMKKTSKEMDKILGDLLEDHRRNRKTSNEKDVDPSHQDFMDVMLSLLDGSSIEGFDCDTIIKATILTVYAGGVETTSATLVWAISLLLNNPHVLEKLKEELDIQVGKERCVEVSDIDKLVYLQAVIKETLRLYPADPLSVPREFSEDCNLAGYEVKKGTRLILNLWKMHMDPNVWVDPLEFKPERFLTTHKDIDVKGRHFELLPFGCGRRICPGISFGLQVLHLNLASFLHSFKISKPSAEPIDMTEASGITYTKATPLEILVKPRFSSNYYDLK 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00256 527 PRINTS E-class P450 group I signature 89 110 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00256 527 PRINTS E-class P450 group I signature 190 208 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00256 527 PRINTS E-class P450 group I signature 332 358 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00256 527 PRINTS E-class P450 group I signature 454 464 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00256 527 PRINTS E-class P450 group I signature 375 393 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00256 527 PRINTS E-class P450 group I signature 464 487 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00256 527 PRINTS E-class P450 group I signature 65 84 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00256 527 PRINTS E-class P450 group I signature 312 329 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00256 527 PRINTS E-class P450 group I signature 416 440 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00256 527 Gene3D Cytochrome P450 27 523 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00256 527 SUPERFAMILY Cytochrome P450 40 518 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00256 527 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 457 466 IPR017972 GO:0005506|GO:0016705
Trre12g00256 527 PANTHER CYTOCHROME P450 82C3-RELATED 15 524 - -
Trre12g00256 527 Pfam Cytochrome P450 39 504 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00256 527 FunFam Cytochrome P450 82C4 27 516 - -
Trre12g00256 527 CDD CYP82 69 518 - -
Trre12g00256 527 PRINTS P450 superfamily signature 376 387 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00256 527 PRINTS P450 superfamily signature 323 340 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00256 527 PRINTS P450 superfamily signature 455 464 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00256 Trre-Chr12 2157665 2159529 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00256 15 524 Cytochrome P450 AT4G31970 47.592 6.20e-171 491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00256 - - gmx:100803451 654.44