Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00253 ATGGAATTGGTTTTTGATTCCCTAACTATTAGTGCCATTACACTTGCATTCTCTTCAATATTCTTCTTTTACTATTTGTTTCAATATAGATCCTCCAAATCTTCTCTTAGCAAAAAGGCCCCTATAGTTCAAGGGGCATGGCCAATACTTGGTCACCTCCCACTATTAAGGCCTTCAAAAGGAACATCTCATAGAACCTTAGGTGGATTAGCCAACAAATATGGCCCTTTATTTTCCATTAAGCTTGGTTCCAAACGTGCTTTGGTAATAAGTGATTGGGAAATGGCTAAGGAATGTTTCACCAAAAATGACTTAGCAATTTCCACCCGTCCTAGACTTGAATCAGCTCAACATATGGCTTACAATGGAGCCATGTTTACATTAGCACCCTACGGTCCTTATTGGCGACAAGCGCGTAAGATTACAACTTTAGAGATCTTGAGTCATCGACGCTTGGAGCAACTACAACATTTTCGTGTCATGGAAGTTCGACGTTCAATTAAAGAGCTCTACAATGTTTACAAGTCATCAAACAATGTTTCCGTGGACTTGAAGCAATGGTTCGCTCAATTGAGTTCCGACATTGTTCTTCCGATGTTGGTTGGGAACCGATTCTTCGGTGCTACAAGCGTGATCGACAAGGAAAAAGCACAAAAATGTAGACAAACTTTGAATGAGATGTTGCATTTGGTAGGAGTATTCACTGTGGGAGATGCTCTTCCATTTTTGAAATGGTTTGATTTTGGTGGTCATGTGAAGGCCATGAAAAGAGCTTATAAAGAAATGGACAAGATTCTAAGTGAGTTGTTGGAGGAGCATCGTAGCCATAAAAAGACTTTGAGTGAGAAGGATAATGTTGATCCTGATCATCAAGATTTCATGGATGTATTGCTTTCATTGCTTGATGGAACAACAATTGAAGGATTTGATTCTGATACCACAATCAAAGGCACAATATTGGCTGTGATTGCGGGAGGACTTGATACAACTAGTGCCACCCTTACATGGGCAATGAGTTTGTTACTAAAAAATCCCCATGTAATGAAAAAAGCAAAAGAAGAACTCGACATTCAAGTTGGAAAAGAGAGGTGTGTAGAAGTGTCTGATATAGATAAGTTGGTTTATCTTCAAGTTATAGTTAAAGAGACGCTGAGATTATATCCACCTGTCCCACTTTCAGTACCACGTGAATTCTCAGAAAACTGCAATTTAGGTGGTTATGAAATCGAAAAAGGAACTCGACTGATCTTGAATCTTTGGAGGATCCACACTGATCCTAAGGTTTGGTCAGATCCATTAGAATTCAAACCGGAACGGTTTCTTACTACTCATAAAGATATTGATGTTAAGGGTCATAATTTTGAATTATTACCTTTTGGTAGCGGGAGAAGGATTTGTCCCGGAATATCGTTGGGCCTTCAAATGGTACATTTAGCTTTAGCTAGTTTTTTGCATTCCTTTGAAATCTCAAGTCCATCAACTGAACCAATTGATATGACCGAAGCTTTTGGAATAACCAACACCAAAGCGACTCCTCTTAAGATTCATATTAAGCCATGTTTCGCTTCGACGTATTATGAAAGTATGTGA 1590 0.3893 MELVFDSLTISAITLAFSSIFFFYYLFQYRSSKSSLSKKAPIVQGAWPILGHLPLLRPSKGTSHRTLGGLANKYGPLFSIKLGSKRALVISDWEMAKECFTKNDLAISTRPRLESAQHMAYNGAMFTLAPYGPYWRQARKITTLEILSHRRLEQLQHFRVMEVRRSIKELYNVYKSSNNVSVDLKQWFAQLSSDIVLPMLVGNRFFGATSVIDKEKAQKCRQTLNEMLHLVGVFTVGDALPFLKWFDFGGHVKAMKRAYKEMDKILSELLEEHRSHKKTLSEKDNVDPDHQDFMDVLLSLLDGTTIEGFDSDTTIKGTILAVIAGGLDTTSATLTWAMSLLLKNPHVMKKAKEELDIQVGKERCVEVSDIDKLVYLQVIVKETLRLYPPVPLSVPREFSENCNLGGYEIEKGTRLILNLWRIHTDPKVWSDPLEFKPERFLTTHKDIDVKGHNFELLPFGSGRRICPGISLGLQMVHLALASFLHSFEISSPSTEPIDMTEAFGITNTKATPLKIHIKPCFASTYYESM 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00253 529 Coils Coil 252 272 - -
Trre12g00253 529 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 459 468 IPR017972 GO:0005506|GO:0016705
Trre12g00253 529 PRINTS E-class P450 group I signature 418 442 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00253 529 PRINTS E-class P450 group I signature 377 395 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00253 529 PRINTS E-class P450 group I signature 456 466 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00253 529 PRINTS E-class P450 group I signature 314 331 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00253 529 PRINTS E-class P450 group I signature 191 209 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00253 529 PRINTS E-class P450 group I signature 71 90 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00253 529 PRINTS E-class P450 group I signature 334 360 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00253 529 PRINTS E-class P450 group I signature 95 116 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00253 529 PRINTS E-class P450 group I signature 466 489 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00253 529 Gene3D Cytochrome P450 25 525 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00253 529 PANTHER CYTOCHROME P450 82C3-RELATED 19 526 - -
Trre12g00253 529 Pfam Cytochrome P450 45 506 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00253 529 SUPERFAMILY Cytochrome P450 46 519 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00253 529 CDD CYP82 75 520 - -
Trre12g00253 529 PRINTS P450 superfamily signature 457 466 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00253 529 PRINTS P450 superfamily signature 325 342 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00253 529 PRINTS P450 superfamily signature 378 389 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00253 529 FunFam Cytochrome P450 82C4 30 518 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00253 Trre-Chr12 2127417 2129328 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00253 17 519 Cytochrome P450 AT4G31940 47.656 2.39e-174 500
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00253 - - gmx:100805047 669.463