Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00252 ATGGCCGTTTCGTCTCGCCCTAAGCTTGTTGCAACGGAACATTTGGCTTATAAAGGAGCCATGTTTGGTTTTGCACCCTATGGCCCTTATTGGCGGCAACTTCGCAAGATTGCAACTTTAGAGATCCTCTCCAATCGTCGAGTTGAACAAGCAAAACATGTTCATATTTCTGAAGTTCGAACATCAATTAAAGAGCTTTGCGATGGTTGGTCTAGCAAAAAGAGCGAGTTGGGTTCATCAAACTATGTATTGGTGGATATGAAGGAGTGGTTTACACACTTGACATTCAACATGGTTCTTCGAATGGTTGTTGGAAAGAGATATTTTGGTGTAGAAACTAATGTTGAAGAAGAAGAAGCTCAAAGATGTGTGCAAGCTTTGAAGGAGTTGATGCATTTGTTTGGGATAATAACGGTAGGAGATGTTATTCCAAGTTTGAAATTGTTTGATTTTGGTGGTCATGTGAAGGCAATGAATGGAACTTCTAAACGATTGGACAAAATTTTAGGTGAATGGTTGAAGGAGCGTCGCCATAACAAAATATTGGGTGAAAATATTAATGGTCAAAATCAAGACATCTTAGATGTGTTGCTTTTATTGTTTGATGGAAGAACTATCGAAGGGTTTGATTCTGATACCGTAATCAAAGCCACAATATTGACATTATTTGCTGGAGGAACAGACACAAGTAGTGTTATTCTTATATGGGCACTATGTTTGCTATTGAAAAATCCTCTTGTAATGGAAAAAGCTAAAGAAGAACTTAATATTCAAGTTGGTAAAGAGAGATGTGTCAATGAGTTAGATATAAATAATTTGGTATACCTTCAATCTATAATCAAAGAAACATTAAGATTGTATCCACCGGGTCCTCTCTCAAGACCTCATGAATTTTCAGAAAATTGCACTTTGGGTGGTTTTGAGGTTAAAAAAGGAACTCGATTAATCACAAATCTTTGGAAAATTCACACAGATCTTACTGTTTGGCCAGATCCATTAGAGTTCAAACCTGAAAGGTTTCTTACAACTCATAAAGATGTGGATTTTAGAGGTAATCATTTTGAACTATTGCCATTTGGAAGTGGTAGAAGGATGTGTCCTGGAATATCATTTGGACTTCAAATGTTGCATTTTTCTCTAGCAAATTTTTTGCATTCCTTTGATATCTTAAACCCAACACCTGAACTTGTTGATATGACCGAAGAATTTGGATTAACAAATACTAAAGCTACTCCGCTTAAGATTCTTGTTAAACCACGTTTGTCTCTCAGCTGTTATGAAATTGTGTAA 1290 0.3636 MAVSSRPKLVATEHLAYKGAMFGFAPYGPYWRQLRKIATLEILSNRRVEQAKHVHISEVRTSIKELCDGWSSKKSELGSSNYVLVDMKEWFTHLTFNMVLRMVVGKRYFGVETNVEEEEAQRCVQALKELMHLFGIITVGDVIPSLKLFDFGGHVKAMNGTSKRLDKILGEWLKERRHNKILGENINGQNQDILDVLLLLFDGRTIEGFDSDTVIKATILTLFAGGTDTSSVILIWALCLLLKNPLVMEKAKEELNIQVGKERCVNELDINNLVYLQSIIKETLRLYPPGPLSRPHEFSENCTLGGFEVKKGTRLITNLWKIHTDLTVWPDPLEFKPERFLTTHKDVDFRGNHFELLPFGSGRRMCPGISFGLQMLHFSLANFLHSFDILNPTPELVDMTEEFGLTNTKATPLKILVKPRLSLSCYEIV 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00252 429 CDD CYP82 2 420 - -
Trre12g00252 429 Gene3D Cytochrome P450 1 420 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00252 429 PANTHER CYTOCHROME P450 82C3-RELATED 2 426 - -
Trre12g00252 429 PRINTS E-class P450 group I signature 234 260 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00252 429 PRINTS E-class P450 group I signature 277 295 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00252 429 PRINTS E-class P450 group I signature 366 389 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00252 429 PRINTS E-class P450 group I signature 356 366 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00252 429 PRINTS E-class P450 group I signature 318 342 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00252 429 PRINTS E-class P450 group I signature 94 112 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00252 429 PRINTS E-class P450 group I signature 214 231 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00252 429 Pfam Cytochrome P450 5 406 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00252 429 SUPERFAMILY Cytochrome P450 4 420 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00252 429 PRINTS P450 superfamily signature 357 366 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00252 429 PRINTS P450 superfamily signature 225 242 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00252 429 PRINTS P450 superfamily signature 278 289 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00252 429 FunFam Cytochrome P450 82C4 1 418 - -
Trre12g00252 429 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 359 368 IPR017972 GO:0005506|GO:0016705
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00252 Trre-Chr12 2108784 2110549 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00252 2 421 Cytochrome P450 AT4G31940 48.244 1.30e-140 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00252 - - gmx:100805047 602.053