Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00248 ATGGATTTAGTTCTAAATTTCCAAAATGTCACGACAATAGGTTTTATTTCTTTCATCTTCTTAGTTTATTTATTCCATATTTTTCCTTCCAAAGATGTTAAAAAGGGTAGAGAACCTCCCATGGCCTCAGGTTCATGGCCTATACTAGGTCACCTCTTAGTATTAGGTGGTTCCAAAACACCTCATAAAACATTAGGCACCATGGCTAACAAATATGGACCCCTATTCACAATAAAACTTGGTACAAAACGTGCTTTGGTACTAAGTAATTGGGAAATGGCCAAAGAGTGTTACACTATAAATGACGCCGCCGTTTCGTCTCGTTCTAAACTTGTTGCAATTGAACATATAGCTTATAATCAAGCCAGCTTTGGTTTTGCCCCCTATGGTTCATATTGGCGCGAAATGCGCAAAATTGTTAGTATATTCCTTTCGAATCGTCGAATGCAACAACTAAGCCATGTTCGAGTTGCAGAAGTTAAAACTTCAATCAAAGAGCTTTTTCATGTTTGGTCTAGTAAGAAAAATGATTCTGGCTACTTGTTGGTGGAGATGAAGCAGTGGTTCACCCAATTGGTATTCAATATAGTTTTCCAAACAATGGCTGGGAAGAGATATTTTGGTGACACAGCAGTGGTAAAGGAGAAAGAAGCACAAAAAGTTGTAAAGGCTTTGAGGTATTTCATGCATATGTTAGGGGTATGTACAATGGCTGATGCTGTTCCTATTCTAAGATGGATGAAATTAGGAGTGAAAGCAATGAAAGAAACTGCCAAAGAATTGGACATAGTTTTAGATGATTGGTTAGTGGAACATCATAAGATGAAGGGTTTGGTTGAAAAGGTTGAAAGTGACCAAGATTTTATGGACATGATGATTTCAATGCTTGATGGTGCCACAATCAATGGGTTTGATGCTGATACTATAAACAAAGCCACAACATTGGCATTAATATTGGGAGCAACTGATACAAGCACAGTTACCCTTACATGGGTAATTTGTTTACTATTGAGAAATCCTCTTGTATTAGAAAAAGCTAAAGAAGAACTCAAAATCCAAATTGGAGAAGAAAGATTCATAATTGAATCGGACATAAATAAGTTGGTATACCTTCAGGCAATAGTGAAAGAGACACTAAGATTGTATCCTCCGGGTCCTCTTTCAGCACCTCGTGAATTTACTGAAGATTGTAATTTAGACGGTTATTATATTAAAAAAGGAACCCGACTAATCACAAATCTTTGGAAAATTCACACTGATTCAAGTATTTGGCCAGATCCATTGGAGTTCAAGCCAGAAAGATTTCTTACCACTCATAAAGATATTGATGCCAAAGGTCAACATTTTGAATTGTTACCATTTGGGAGTGGTAGAAGGATATGTCCAGGAATATCCTTTGGCCTTCATATGATTCATTTAACTTTGGCTAATTTTTTACATTCCTCTGAAATCTCAAATGGATCTAGTGAACCTGTTGATATGACTGAAAATCTTGGAATGACTAATGAAAAAGCTACACCACTTGAGATTTTGGTTAAACCACATTTCTCTCATAAGTATTATGAAACTATATAA 1575 0.3619 MDLVLNFQNVTTIGFISFIFLVYLFHIFPSKDVKKGREPPMASGSWPILGHLLVLGGSKTPHKTLGTMANKYGPLFTIKLGTKRALVLSNWEMAKECYTINDAAVSSRSKLVAIEHIAYNQASFGFAPYGSYWREMRKIVSIFLSNRRMQQLSHVRVAEVKTSIKELFHVWSSKKNDSGYLLVEMKQWFTQLVFNIVFQTMAGKRYFGDTAVVKEKEAQKVVKALRYFMHMLGVCTMADAVPILRWMKLGVKAMKETAKELDIVLDDWLVEHHKMKGLVEKVESDQDFMDMMISMLDGATINGFDADTINKATTLALILGATDTSTVTLTWVICLLLRNPLVLEKAKEELKIQIGEERFIIESDINKLVYLQAIVKETLRLYPPGPLSAPREFTEDCNLDGYYIKKGTRLITNLWKIHTDSSIWPDPLEFKPERFLTTHKDIDAKGQHFELLPFGSGRRICPGISFGLHMIHLTLANFLHSSEISNGSSEPVDMTENLGMTNEKATPLEILVKPHFSHKYYETI 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00248 524 CDD CYP82 73 514 - -
Trre12g00248 524 PRINTS E-class P450 group I signature 372 390 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00248 524 PRINTS E-class P450 group I signature 69 88 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00248 524 PRINTS E-class P450 group I signature 461 484 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00248 524 PRINTS E-class P450 group I signature 192 210 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00248 524 PRINTS E-class P450 group I signature 451 461 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00248 524 PRINTS E-class P450 group I signature 413 437 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00248 524 PRINTS E-class P450 group I signature 329 355 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00248 524 PANTHER CYTOCHROME P450 82C3-RELATED 18 521 - -
Trre12g00248 524 SUPERFAMILY Cytochrome P450 45 514 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00248 524 PRINTS P450 superfamily signature 320 337 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00248 524 PRINTS P450 superfamily signature 373 384 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00248 524 PRINTS P450 superfamily signature 452 461 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00248 524 FunFam Cytochrome P450 82C4 30 513 - -
Trre12g00248 524 Pfam Cytochrome P450 42 502 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00248 524 Gene3D Cytochrome P450 26 520 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00248 524 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 454 463 IPR017972 GO:0005506|GO:0016705
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00248 Trre-Chr12 2087012 2089436 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00248 21 521 Cytochrome P450 AT4G31940 46.289 3.07e-168 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00248 - - gmx:100805047 674.855