Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00244 ATGGATTTAGTTCTAAACTATCTTAACACCGCAACCATAGCACTAATTGCTCTAATTCCCCTCTTTTTCTTTCTATTTCGTTTCTCCAAAGGTTCTCATACCAAAGAACCTCCTATAATTTCAGGGTCATGGCCTTTACTAGGCCACCTTCCACTAATGAGAAATACACAAACACCCCACAAAACCTTAGCTGCCTTAGTCGATAAATATGGGCCCATATTCACAATCAAGCTTGGTGCTACAAATGCTTTGGTACTTAACAATTGTGAATTAGCCAAAGAATGTTTCACAAAGAACGACATCGTCGTTTCATCGCGTCCTAAACCGGTCGCGGTTGAACACATGTCGTACAATCAAGCTTTCATTGGTTGGGCACCGTACGGAACATATTGGCGCCAATTGAGAAAAATTGTTACCTTAGAAATTCTCTCAAGTCGTCGAGTTGAATTACTGGGTCACATTCGTGTCTCAGAAGTTCAAACATCGATAAAAGAGCTTGTTAAAGTTTGGTCTAATCAAGTGTTAGCAGTACAAAGTACTAGCGAGTCTAATCATGCTAGTACTAAAGACTATGTGTCGGTCGAATTGAAAAAATGGTTTGCACAATTGACATTAAATATGGTACTAAGAATGGTTGTTGGGAAGAGATGTTTTGGTGACATGGTTGATGAGAAAAATAAGGAAGAAGCAATAAGGTTTTTGGATAATATAAGAGATTTTATGCGTTTAATTGGGACATTTACCGTAGGAGATGCTGTTCCATTTTTAAAGTGGTTGGATTTGGGAGGTCATGAAAAGCAAATGAAAGAATGTGCAAAGAAATTTGATATATTGTTGAGTGAGTGGTTGGAAGAGCATCGTGAAAAGAAGGTTTTAGGTAGTGATAAGGTTGTGGGAGAAAGAGACTTCTTGGATGCTATGCTTTTGGTGCTTAATGACAAACCCATTGAGGGATTTAGTGCAGATACCATCATCAAAGCCACAACATTGGAATTGATTATAGGAGGAAGTGACACAACCGCAGGAACACTTTCATGGGCAATGTGTCTACTATTAAAAAATCCCCATATACTAGAAAAAGTAAAAGAAGAACTTAACACACAAATTGGAAAAGACAGATGGGTAAACGAATCCGATATAAATAATTTAGTGTATCTTAACGCTATAATTAAAGAGACATTAAGATTGTATCCACCAGCTCCATTTTCATCTCCTCGTGAATTTACTGAAGATTGCACAATAGGTGGATATCATATTAAGAAAGGAACTCGATTGATGCCAAATTTCTGGAAGATTCATAGAGATCCTAGTGTTTGGTCAGATCCGTTAGAATTCAAACCTGAACGATTTCTTACCACCCACAAAGATGTTGATTTTAAGAGTAAAAATTTCGAATTGTTACCATTTGGAAGTGGGAGAAGAATGTGTGCCGGAATGTCCCTTGGTTTGAATATGCTTCATTATATTCTAGCTAATTTCTTGCATTCTTTTGAATTCTTCAATCCTTCTCCAGAATCAATTGACGTGACCGAAGTTCTTGAATTTACAAGCACTAAAGCTACTTCGCTTGAGGTTTTGGTTAAACCTTCTTTGTCTCTCAAATGTTATGAAACTATGTGA 1620 0.3716 MDLVLNYLNTATIALIALIPLFFFLFRFSKGSHTKEPPIISGSWPLLGHLPLMRNTQTPHKTLAALVDKYGPIFTIKLGATNALVLNNCELAKECFTKNDIVVSSRPKPVAVEHMSYNQAFIGWAPYGTYWRQLRKIVTLEILSSRRVELLGHIRVSEVQTSIKELVKVWSNQVLAVQSTSESNHASTKDYVSVELKKWFAQLTLNMVLRMVVGKRCFGDMVDEKNKEEAIRFLDNIRDFMRLIGTFTVGDAVPFLKWLDLGGHEKQMKECAKKFDILLSEWLEEHREKKVLGSDKVVGERDFLDAMLLVLNDKPIEGFSADTIIKATTLELIIGGSDTTAGTLSWAMCLLLKNPHILEKVKEELNTQIGKDRWVNESDINNLVYLNAIIKETLRLYPPAPFSSPREFTEDCTIGGYHIKKGTRLMPNFWKIHRDPSVWSDPLEFKPERFLTTHKDVDFKSKNFELLPFGSGRRMCAGMSLGLNMLHYILANFLHSFEFFNPSPESIDVTEVLEFTSTKATSLEVLVKPSLSLKCYETM 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00244 539 FunFam Cytochrome P450 82C4 27 528 - -
Trre12g00244 539 PRINTS P450 superfamily signature 467 476 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00244 539 PRINTS P450 superfamily signature 476 487 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00244 539 PRINTS P450 superfamily signature 388 399 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00244 539 PRINTS P450 superfamily signature 335 352 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00244 539 SUPERFAMILY Cytochrome P450 43 529 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00244 539 ProSiteProfiles RGS domain profile. 204 240 IPR016137 -
Trre12g00244 539 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 469 478 IPR017972 GO:0005506|GO:0016705
Trre12g00244 539 CDD CYP82 71 529 - -
Trre12g00244 539 PANTHER CYTOCHROME P450 82C3-RELATED 16 536 - -
Trre12g00244 539 Gene3D Cytochrome P450 25 532 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00244 539 PRINTS E-class P450 group I signature 428 452 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00244 539 PRINTS E-class P450 group I signature 466 476 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00244 539 PRINTS E-class P450 group I signature 67 86 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00244 539 PRINTS E-class P450 group I signature 344 370 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00244 539 PRINTS E-class P450 group I signature 476 499 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00244 539 PRINTS E-class P450 group I signature 91 112 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00244 539 PRINTS E-class P450 group I signature 387 405 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00244 539 PRINTS E-class P450 group I signature 324 341 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00244 539 Pfam Cytochrome P450 43 503 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00244 Trre-Chr12 2071070 2073443 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00244 8 531 Cytochrome P450 AT4G31940 44.925 2.24e-161 468
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00244 - - gmx:100789386 689.108