Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00239 ATGGCATCAGGTGGAACAGAAGCTTTCCCAGATTTAGGCAAACACTGCCAACATCTTGATTGTCACCAGCTTGATTTCCTTCCTTTCACATGTGATGGCTGCAAACAAGTATTCTGTGTAGAACATAGATCCTACAAAGCTCATGAATGTCCGAAACATGACCACAATAGTAGAAAAGTGGTTGTTTGTGAAGAATGTTCCATGTCCATGGAGATCACAACCAAAACTGGAGAAAACGAAGAAACGATCTTAAAAAGGCACCGCACTTCAGGGAAGTGTGACCCTAGCAAGAAGAAGAAACCAACTTGCCCGGTGAAGCGTTGCAAAGAGATTTTGACGTTTTCGAACACGAGTACGTGTAAAACTTGCCACATTAAGGTGTGTCTCAAGCACCGTTTTGCGGCCGATCATGCTTGTAGTAAAGGAGATTCATCTTCCTCCTTAACAAATGCAGTTGGTAATGGAAGATGGAATAATAGGTTTATGGCTGCTTTGGCTTCAAGGAATAATCAAGACTGTGCCAAAAAAGCTGGAACTCGTTCTACTACTTCTCCTCCTAGTACTCCTTCTGTTAAGGCTTATTGA 585 0.4239 MASGGTEAFPDLGKHCQHLDCHQLDFLPFTCDGCKQVFCVEHRSYKAHECPKHDHNSRKVVVCEECSMSMEITTKTGENEETILKRHRTSGKCDPSKKKKPTCPVKRCKEILTFSNTSTCKTCHIKVCLKHRFAADHACSKGDSSSSLTNAVGNGRWNNRFMAALASRNNQDCAKKAGTRSTTSPPSTPSVKAY 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00239 194 SMART AN1_Zf_4 103 144 IPR000058 GO:0008270
Trre12g00239 194 SMART AN1_Zf_4 16 55 IPR000058 GO:0008270
Trre12g00239 194 Gene3D - 2 70 IPR035896 -
Trre12g00239 194 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 8 186 - -
Trre12g00239 194 Pfam AN1-like Zinc finger 16 53 IPR000058 GO:0008270
Trre12g00239 194 Pfam AN1-like Zinc finger 103 141 IPR000058 GO:0008270
Trre12g00239 194 ProSiteProfiles Zinc finger AN1-type profile. 97 147 IPR000058 GO:0008270
Trre12g00239 194 MobiDBLite consensus disorder prediction 172 194 - -
Trre12g00239 194 SUPERFAMILY AN1-like Zinc finger 6 59 IPR035896 -
Trre12g00239 194 Gene3D - 77 154 IPR035896 -
Trre12g00239 194 SUPERFAMILY AN1-like Zinc finger 93 141 IPR035896 -
Trre12g00239 194 ProSiteProfiles Zinc finger AN1-type profile. 10 58 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00239 Trre-Chr12 2031114 2032142 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00239 1 173 C2H2 Transcription Factor Family AT3G28210 61.494 1.40e-75 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00239 - - aprc:113867149 325.865