Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00238 ATGGAGATTCAAAAAAACACAAACAACAAATGGAGAAGTCCAAAAAAGGAACATACAAAACCAGAGAAAAAACAAACATCATTAGAACCAATCTCAACAACAACAATAACACCAAAGATGAAATGGAAGAAGATGATGATTTTCTTCAACACAACAAAAACTGCACAAAATCCACCTCAAGAATTTCTCTGCCCCATTTCTGGTTTTCTCATGTCTGACCCTGTAATTGTCTCCTCAGGCCATTCCTTTGACAGAATCTCCATTGAAGCTTGTAAAAATCTCAACTTTACCCCTCAACTTCAAGATGGCACCACCCCCAATTTCGCAACCCTAATTCCCAATCTTAATCTCAAATCCTCAATTCTCAAATGGACCCAATCCCAAACCAAATTCCAAACAAACCCAAATCTAACAACCACCGAAAACCTCGTACGAAGATTAATTTCCTCAAAAAAACATCAAAAGCATCAAAACGACGACGTTTCAGAGAAAAACGACCAAAAAGAAGAAACACGACAAATCTCAATCTTAACACCACGAAAAACCTCGTACTCGAGCTCAGAGGAATCCATAGCTACTGCCACGTCATCATCTTCAACTACACCACGACCGCAATATCAAAGTTTCTGTTACTCTTCACCTTCTTCATCTGAAATTGAACCTTCAACATCACCAGAAGAAGAAGAAATCGTAACAAAACTCAGAAACCCACAACAGTTTATAATCGAAGAAGCATTAATCTCTCTCAGAAAAATCACAAGAACGAAAGAGGAAACAAGGGTTCAACTTTGCACCAACAGGGTACTATGTTCTTTGCGTACGTTAATTTTGTCGAAAAACGAGGTTATAAGAGTCAACGCTCTAGCTTCATTAGTCAACCTTTCTCTTGAAAAAGTCAACAAAGTGAAGATCGTACGGTCAGGAATTGTTCCACCGTTGATTGAGGTTTTGAAGTTTGGATCGTGTGAAGCACAGGAACACGCTGCTTGTGTGTTCTTTAGTTTAGCGCTTGATGATGATAATAAAACTGCTATTGGTGTTTTAGGTGCTCTTTTGCCGTTGCTTCACGCGCTTAAATCAGAGAGTGAGAGAACGCGCCATGACTCGGGTCTAGCGCTTTCTCATTTGTCTTTAGTGAGGAGTAATAGGGCTAAGATGGTTAAGCTTGGATTTGTTTCGGTTCTTTTGCGAATGGTTAAGTCGGGTCATATGATGGATCAGACTTTATTGATTTTGGGTAATTTGGGATTTGCGTCAGATGGTCGAGCTGCTATGTTGGATGCGGGTGTTGTGGAGTGTTTGGTGGGTTTGTTGAGTGGGACCGAGTTGGATTCTGAGTTGACTCGAGAGAGTTGTGTTGGGGTTTTGTATGCATTGAGTCACGGTGGGTTGAGGTTTAAGGCTGTGGCGAAGGAGATTGGAGTTGTGGAAATGTTGGAAAAGATGGAGAAAATGAAAAGCGAGAAGGCTAATGAAAAGGTAAAGAGGATATTGGAGATGATGAGTGAGAAGGAGGTGGAAGAGGAGGAGGTGGATTGGGAGGAGTTGCTTGATTCAGGGTTCAGTTGTCGACCTATGAGTCGACAGGATAGTGGGTTGGACGAGTCAAATGTTAACAAAGTTGAGTTTTGA 1632 0.4105 MEIQKNTNNKWRSPKKEHTKPEKKQTSLEPISTTTITPKMKWKKMMIFFNTTKTAQNPPQEFLCPISGFLMSDPVIVSSGHSFDRISIEACKNLNFTPQLQDGTTPNFATLIPNLNLKSSILKWTQSQTKFQTNPNLTTTENLVRRLISSKKHQKHQNDDVSEKNDQKEETRQISILTPRKTSYSSSEESIATATSSSSTTPRPQYQSFCYSSPSSSEIEPSTSPEEEEIVTKLRNPQQFIIEEALISLRKITRTKEETRVQLCTNRVLCSLRTLILSKNEVIRVNALASLVNLSLEKVNKVKIVRSGIVPPLIEVLKFGSCEAQEHAACVFFSLALDDDNKTAIGVLGALLPLLHALKSESERTRHDSGLALSHLSLVRSNRAKMVKLGFVSVLLRMVKSGHMMDQTLLILGNLGFASDGRAAMLDAGVVECLVGLLSGTELDSELTRESCVGVLYALSHGGLRFKAVAKEIGVVEMLEKMEKMKSEKANEKVKRILEMMSEKEVEEEEVDWEELLDSGFSCRPMSRQDSGLDESNVNKVEF 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00238 543 MobiDBLite consensus disorder prediction 521 543 - -
Trre12g00238 543 SMART arm_5 418 461 IPR000225 GO:0005515
Trre12g00238 543 SMART arm_5 297 337 IPR000225 GO:0005515
Trre12g00238 543 SMART arm_5 338 378 IPR000225 GO:0005515
Trre12g00238 543 MobiDBLite consensus disorder prediction 9 25 - -
Trre12g00238 543 MobiDBLite consensus disorder prediction 150 230 - -
Trre12g00238 543 Pfam Kinesin-associated protein (KAP) 373 483 - -
Trre12g00238 543 MobiDBLite consensus disorder prediction 1 34 - -
Trre12g00238 543 MobiDBLite consensus disorder prediction 176 221 - -
Trre12g00238 543 Gene3D - 223 500 IPR011989 -
Trre12g00238 543 MobiDBLite consensus disorder prediction 153 175 - -
Trre12g00238 543 Pfam U-box domain 59 128 IPR003613 GO:0004842|GO:0016567
Trre12g00238 543 Pfam Armadillo/beta-catenin-like repeat 300 333 IPR000225 GO:0005515
Trre12g00238 543 SUPERFAMILY ARM repeat 230 497 IPR016024 -
Trre12g00238 543 PANTHER U BOX DOMAIN-CONTAINING 39 502 - -
Trre12g00238 543 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 39 144 IPR013083 -
Trre12g00238 543 SMART Ubox_2 61 124 IPR003613 GO:0004842|GO:0016567
Trre12g00238 543 Coils Coil 475 507 - -
Trre12g00238 543 ProSiteProfiles U-box domain profile. 57 131 IPR003613 GO:0004842|GO:0016567
Trre12g00238 543 SUPERFAMILY RING/U-box 57 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00238 Trre-Chr12 2021690 2023321 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00238 59 543 U-box Gene Family AT5G40140 50.794 1.38e-144 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00238 - - lja:Lj2g3v1020040.1 573.548