Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00214 ATGGGCAAGTCAACACTTTTGAAGCATCTTGCTTGGAGGAAGATACCAGTACCTAAGAATATTGATGTCCTTCTGGTTGAGCAGGAGGTAGTTGGGGATGATAAAACAGCCCTTGAAGCCGTCGTTTCAGCCAATGCAGAACTTGTTAAAGTTCGACAGCAAGTTGCAGATTTACAGAATGCAGCAGCTTCTGGAAAAGATGATACTAATGAGGATGAGGATGCCGGAGAAAAGCTCGCAGAGCTGTATGAAAAATTACAACTGATGGGGTCTGATGCTGCTAAACCTCAAGCATCGAAGATTTTAGCTGGTCTGGGTTTTACAAAGGATATGCAGGGGCGTCCGACAAAATCCTTTAGTGGTGGGTGGAGGATGAGAATTTCATTAGCTCGAGCACTTTTCGTTCAGCCCACTTTATTATTGCTCGATGAACCCACTAATCATCTTGACCTGAGGGCTGTTCTCTGGTTGGAAGAGTACTTGTGTCGTTGGAAGAAAACTTTGGTGGTTGTATCGCACGACAGAGATTTCCTCAATACTGTATGCACTGAAATTATTCACCTGCATGATTTGACACTTCGTTTCTATCGTGGAAATTTTGATGCTTTTGAGAGTGGGTATGAACAGCGTCGTAGAGAGGTGGATAAGAAGCATGACATTTATGAGAAGCAATTGAAGGCAGCTACAAGGACTGGAAACAAGGCTCAACAAGATAAGGTGAAGGATCAAGCTAAGTCTGCAGCTTCTAAGGAAGCTTCGAAAAGCAAAAGTAAGGGAAAGGGTGATGAGAATGAGGCCCAAGTAGAGGTACCACGCAAGTGGAGAGAGTACAGCGTGGCTTTCCACTTTCCTGAACCTACTGAGCTCACACCTCCACTTCTGAAGGCTATTAATGCGAGCTTCGTCTATCCAAACCGAGAGGATTTCAGACTCTCAAATGTTGATGTTGGCATTGATATGGGAACTCGTGTTGCCATTGTTGGGCCTAATGGAGCCGGAAAATCTACACTGCTAAATCTTCTAGCCGGTGTTTTGAATCCAACGGAAGGTGAAGTTCTAAGGAATCCGAAGTTGAGAATAGGGAGATACTCCCAACATTTTGTGGACCTACTGACGATGGACGAAACACCTGTTCAGTACCTCCTTCGCCTCCACCCAGACCAGGAGGGACTTAGTAAGCAGGAGGCTGTCCGTGCAAAACTTGGCAAATTTGGGCTACCTAGTCATAATCATCTTACCCCCATTGTCAAACTATCAGGAGGGCAGAAATCTCGGGTCGTTTTCACGTCGATATCCATGTCAAAACCTCACATTTTATTGTTAGATGAACCCACAAATCATCTGGATATGCAAAGTATTGATGCATTGGCCAATGCGCTGAATGAATTCAAAGGCGGAGTTATTCTTGTTAGTCACGATTCTAGATTGATATCACGGGTCTGTGATGATGAAGAAAAGAATCAAATTTGGCTTGTTGAGGATGGCACTGTCAGAATTTTCCCTGGAACATTTGAAAATTACAAGGAAGATTTGCTGAAAGAGATTCAAACTGAAGTTGATGATTGA 1566 0.4381 MGKSTLLKHLAWRKIPVPKNIDVLLVEQEVVGDDKTALEAVVSANAELVKVRQQVADLQNAAASGKDDTNEDEDAGEKLAELYEKLQLMGSDAAKPQASKILAGLGFTKDMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDLTLRFYRGNFDAFESGYEQRRREVDKKHDIYEKQLKAATRTGNKAQQDKVKDQAKSAASKEASKSKSKGKGDENEAQVEVPRKWREYSVAFHFPEPTELTPPLLKAINASFVYPNREDFRLSNVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGVLNPTEGEVLRNPKLRIGRYSQHFVDLLTMDETPVQYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIVKLSGGQKSRVVFTSISMSKPHILLLDEPTNHLDMQSIDALANALNEFKGGVILVSHDSRLISRVCDDEEKNQIWLVEDGTVRIFPGTFENYKEDLLKEIQTEVDD 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00214 521 CDD ABCF_EF-3 119 190 - -
Trre12g00214 521 ProSitePatterns ABC transporters family signature. 119 133 IPR017871 GO:0005524|GO:0016887
Trre12g00214 521 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 274 507 IPR027417 -
Trre12g00214 521 Coils Coil 41 61 - -
Trre12g00214 521 Pfam ABC transporter 2 147 IPR003439 GO:0005524
Trre12g00214 521 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 1 515 - -
Trre12g00214 521 FunFam Putative ABC transporter ATP-binding component 1 257 - -
Trre12g00214 521 Pfam ABC transporter 311 446 IPR003439 GO:0005524
Trre12g00214 521 Coils Coil 211 231 - -
Trre12g00214 521 CDD ABCF_EF-3 294 496 - -
Trre12g00214 521 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1 222 IPR003439 GO:0005524
Trre12g00214 521 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 190 IPR027417 -
Trre12g00214 521 MobiDBLite consensus disorder prediction 226 268 - -
Trre12g00214 521 SMART AAA_5 320 510 IPR003593 GO:0016887
Trre12g00214 521 SMART AAA_5 1 191 IPR003593 GO:0016887
Trre12g00214 521 Gene3D - 1 257 IPR027417 -
Trre12g00214 521 MobiDBLite consensus disorder prediction 235 268 - -
Trre12g00214 521 Gene3D - 281 499 IPR027417 -
Trre12g00214 521 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 294 519 IPR003439 GO:0005524
Trre12g00214 521 FunFam ABC transporter F family member 4 259 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00214 Trre-Chr12 1838050 1839615 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00214 298 472 Calmodulin-binding Proteins AT2G36910 29.851 1.82e-14 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00214 K06184 - gmx:100806865 855.514