Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00209 ATGGGCAAGTCAACACTTTTGAAGCTTCTTGCTTGGAGGAAGATACTAGTACCTAAGAATATCGATGTCCGTCTGGTTGAGCAGGGGATGATAAAACAGCGCTTGAAGCCGTCGTTTCATCCAATGCAGAACTTGTTAAAGTTCGACAAGAAGTTGCAGATTTACAGAATGCAGCTTCTGGCAAAGAGGGTGTGGAAAAAGATGATACTAATGAGGATGAGGATGCTGGAGAAAAGCTCCCAGAGCTGTATGAAAAATCCTCAAGCGTCAAAGATTTTAGCTGGTCTGGGTTATACAGAGGATATGCAGAGCCGTCCTACAAAATCCTTTAGTGGTGGGTGGAGGATGAGAATTTCATTAGCTCGAGCACTTTTCGTTCAGCCCACTCTATTATTGCTCGATGAACCCACTAATCATCTTGACCTGAGGGCTGTTCTCTGGTTGGAAGAGTACCTGTGTCGTTGGAAGAAAACTTTGGTGGTTGTATCGCACGATAGAGATTTCCTCAATACTGTATGCTCTGAAATTATTCATCTGCATGATATGAAACTTCATTTCTATCGTGGAAATTTTGATGCTTTTGAAAGCAGCTAG 594 0.4259 MGKSTLLKLLAWRKILVPKNIDVRLVEQGMIKQRLKPSFHPMQNLLKFDKKLQIYRMQLLAKRVWKKMILMRMRMLEKSSQSCMKNPQASKILAGLGYTEDMQSRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCSEIIHLHDMKLHFYRGNFDAFESS 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00209 197 CDD ABCF_EF-3 110 181 - -
Trre12g00209 197 ProSitePatterns ABC transporters family signature. 110 124 IPR017871 GO:0005524|GO:0016887
Trre12g00209 197 Pfam ABC transporter 2 138 IPR003439 GO:0005524
Trre12g00209 197 Gene3D - 1 197 IPR027417 -
Trre12g00209 197 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 1 196 - -
Trre12g00209 197 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 195 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00209 Trre-Chr12 1823537 1824130 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00209 110 164 Calmodulin-binding Proteins AT2G36910 38.596 4.57e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00209 K06184 - sind:105157103 252.677