Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00207 ATGGGAAAGAAAAAGACAGAGCATGCAGGTCCATCTACAAAGGCCAAGGCAACTAGCAAAGATCTTTCTAAGAAGGAAAATTTTTGTGTGTCTGCCAATTTGGCCAATATGCCTGAAAAGGCATCTTCTTTGAATAAGCCGAAGCCAAAACCTGCTCCAAAAGCTTCTACATACATTGATCATAATGATCTTCCTACCTCTGATGATGATGATTCCGAGGAAGAGCAGTTAGACCAAAAGCATAGGCCTGATGTGAAGCCTCTCGAGTTGTCTATTGCTGAAAAAGAGTTGAAAAAGCGTCAAAAGAAAGATATTTTCGCTGCCCATGTGGCTGAACAGGCAAGGAAAGAAGCTCTTAGGGATGATCGTGATGCTTTCACTGTTGCCATTGGAGATGATGACGCTCATGCTAATGTCAAAGATATAACAATACATAATTTTTCTGTGTCTGCTCGTGGTAAAGAACTTCTTAAAAATGCATCCATCAAGATATCTCATGGAAACCGTTATGGTTTGGTTGGACCGAATGGAATGGGCAAGTCAACACTTTTGAAGCATATTGCTTGGAGGGAGATACCAGTACCTCAGAATATTGATGTCCTTCTGGTTGAGCAGGAGGTAGTTGGGGATGATAAAACAGCCCTTGAAGCCGTCGTTTCAGCCAATGCAGAACTTGTTAAACTTCGACAACAAGTTGCAGATTTACAGAATGGTAAAGATGATACTAATGAGGATGAGGATGCCGGAGAAAAGCTTGCAGAGCTGTATGAAAAATTACAACTGATGGGGTCTGATGCTGCTGAACCTCAAGCATCGAAGATTTTAGCTGGTCTGGGTTTTACAAAGGATATGCAGGGCCGTCCGACCAAATCCTTTAGTGGTGGGTGGAGGATGAGAATTTCATTAGCTCGAGCACTTTTCGTTCAGCCCACTTTATTATTGCTCGATGAACCCACTAATCATCTTGACCTGAGGGCTGTTCTCTGGTTGGAAGAGTACTTGTGTCGTTGGAAGAAAACTTTGGTGGTTGTATCGCACGACAGAGATTTCCTCAATACTGTATGCACTGAAATTATTCACCTGCATGATTTGACACTTCGTTTCTATCGTGGAAATTTTGATGCTTTTGAGAGTGGGTATGAACAGCGTCGTAGAGAGGCGAATAAGAAGCATCAGATTTATGAAAAGCAATTGAAGGCAGCTACAAGGACTGGAAACAAGGCTCAACAAGATAAGGTGAAGGATCAAGCTAAGTCTGCAGCTTCTAAGGAAGCTTCGAAAAGCAAAAGTAAGGGAAAGGGTGATGAGAATGAGGCCCAAGTAGAGGTACCACGCAAGTGGAGAGACTACAGCGTGGCTTTCCACTTTCCTGAACCTACTGAGCTCACAACTCCACTTCTGAAGGCTATTAATGCAAGCTTCATCTATCCAAACCGAGAGGATTTCAGACTCTCAAATGTTGATGTTGGCATTGATATGGGGACTCGTGTTGCCATTGTTGGGCCTAATGGAGCCGGAAAATCTACACTGCTAAATCTTCTAGCCGGTGTTTTGAATCCAACAGAAGGTGAAGTTCTAAGGAATCCGAAGTTGAGAATAGGGAGATACTCCCAACATTTTGTGGACCTACTGACGATGGACGAAACACCTGTTCAGTACCTCCTTCGCCTCCACCCAGACCAGGAGGGACTTAGTAAGCAGGAGGCTGTCCGTGCAAAACTTGGCAAATTTGGGCTACCTAGTCATAATCATCTTACCCCCATTGTCAAACTATCAGGAGGGCAGAAATCTCGGGTCGTTTTCACGTCGATATCCATGTCAAAACCTCACATTTTATTGTTAGATGAACCCACAAATCATCTGGATATGCAAAGTATTGATGCATTGGCCAATGCGCTGGATGAATTCGAAGGTGGAGTTATTCTTGTTAGTCATGATTCTAGATTGGTATCACGCGTCTGTGATGATGAAGAAAAGAGTCAAATTTGGGTTGTTGAGGATGGCACTGTCAGAATTTTCCCAGGAACATTTGAAGATTACAAGGAAGATTTGCTGAAAGAGATTCAAGCTGAAGTTGATGATTGA 2085 0.4302 MGKKKTEHAGPSTKAKATSKDLSKKENFCVSANLANMPEKASSLNKPKPKPAPKASTYIDHNDLPTSDDDDSEEEQLDQKHRPDVKPLELSIAEKELKKRQKKDIFAAHVAEQARKEALRDDRDAFTVAIGDDDAHANVKDITIHNFSVSARGKELLKNASIKISHGNRYGLVGPNGMGKSTLLKHIAWREIPVPQNIDVLLVEQEVVGDDKTALEAVVSANAELVKLRQQVADLQNGKDDTNEDEDAGEKLAELYEKLQLMGSDAAEPQASKILAGLGFTKDMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDLTLRFYRGNFDAFESGYEQRRREANKKHQIYEKQLKAATRTGNKAQQDKVKDQAKSAASKEASKSKSKGKGDENEAQVEVPRKWRDYSVAFHFPEPTELTTPLLKAINASFIYPNREDFRLSNVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGVLNPTEGEVLRNPKLRIGRYSQHFVDLLTMDETPVQYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIVKLSGGQKSRVVFTSISMSKPHILLLDEPTNHLDMQSIDALANALDEFEGGVILVSHDSRLVSRVCDDEEKSQIWVVEDGTVRIFPGTFEDYKEDLLKEIQAEVDD 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00207 694 FunFam ABC transporter F family member 4 140 416 - -
Trre12g00207 694 SMART AAA_5 493 669 IPR003593 GO:0016887
Trre12g00207 694 SMART AAA_5 166 364 IPR003593 GO:0016887
Trre12g00207 694 ProSitePatterns ABC transporters family signature. 292 306 IPR017871 GO:0005524|GO:0016887
Trre12g00207 694 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 100 688 - -
Trre12g00207 694 MobiDBLite consensus disorder prediction 1 86 - -
Trre12g00207 694 CDD ABCF_EF-3 142 363 - -
Trre12g00207 694 Coils Coil 218 245 - -
Trre12g00207 694 Gene3D - 139 427 IPR027417 -
Trre12g00207 694 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 467 692 IPR003439 GO:0005524
Trre12g00207 694 MobiDBLite consensus disorder prediction 399 441 - -
Trre12g00207 694 Pfam ABC transporter 157 320 IPR003439 GO:0005524
Trre12g00207 694 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 141 379 IPR027417 -
Trre12g00207 694 Gene3D - 428 694 IPR027417 -
Trre12g00207 694 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 142 395 IPR003439 GO:0005524
Trre12g00207 694 MobiDBLite consensus disorder prediction 408 441 - -
Trre12g00207 694 FunFam ABC transporter F family member 4 432 694 - -
Trre12g00207 694 Pfam ABC transporter 484 619 IPR003439 GO:0005524
Trre12g00207 694 MobiDBLite consensus disorder prediction 24 40 - -
Trre12g00207 694 Coils Coil 384 404 - -
Trre12g00207 694 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 447 680 IPR027417 -
Trre12g00207 694 CDD ABCF_EF-3 467 669 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00207 Trre-Chr12 1814757 1816841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00207 463 670 Calmodulin-binding Proteins AT2G36910 28.632 7.91e-15 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00207 K06184 - gmx:100806865 1070.46