Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00203 ATGTCTTCTTCTTCCGACGAAGGTTACGCGATCGAACTCTACATGGACCCAGCACTCGAAAACCAAGTTCTCAAAGCATGGAACGTTCTAGCTCGCCGTCAAATCAGCACCGAACTAATCGAAATCGGTTCACGACCACACATCACACTTTTCTCAACTCCTTACCTTCTCGAACCTTCCAAACTTGAATCTATTCTCAAAACCCTAACTTCCAAATTCGATCCATTTTCTCTTTCTTTCTCTTCAATCTCTTCTTTTTCCAATGATAACAACACTCTATTTCTCTCACCTACTCCTTCAATCTCTCTTCTCAATTTTCACTCCAATTTAGTTGATTCCATTGTTAAAGAAGGAATTGAGGTTTCTGATGAATTTGCGGTTGGAAATTGGATTCCTCATTGTGAAGTTGCGAATCATGTTCCGAAATCGAGAATTGCTGAAGCTTTTACTCTTCTTAGAGATCTTAAATTGCCTGTTACTGGTTATGCTGTTGATGTTGCTCTTGTTCAATTCAATCCGATTATCTCCTTTGTGCTTGGTAACAAAATCATCGCGGATTCCTAA 564 0.3954 MSSSSDEGYAIELYMDPALENQVLKAWNVLARRQISTELIEIGSRPHITLFSTPYLLEPSKLESILKTLTSKFDPFSLSFSSISSFSNDNNTLFLSPTPSISLLNFHSNLVDSIVKEGIEVSDEFAVGNWIPHCEVANHVPKSRIAEAFTLLRDLKLPVTGYAVDVALVQFNPIISFVLGNKIIADS 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00203 187 Pfam 2'-5' RNA ligase superfamily 45 170 - -
Trre12g00203 187 SUPERFAMILY LigT-like 2 156 IPR009097 -
Trre12g00203 187 Gene3D Cyclic phosphodiesterase 9 181 - -
Trre12g00203 187 PANTHER - 6 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00203 Trre-Chr12 1715657 1718788 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00203 7 183 Calmodulin-binding Proteins AT5G40190 60.556 1.30e-71 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00203 - - mtr:25495217 257.299