Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00196 ATGACAAGAAGATGGTCCTTTTACATGGATTTTTTGCCAGTTGTAGTGATTATAGGAAATGAATGTATTGACATGGGTTTACTCACTTTGTTCAAAGCAGCAACACTACAAGGAATGAATAATCATGTCTTTATTGCTTATGCTTATGCTGTTGGTACTTCTGTTCTTCTCCCTGTCACTCTTTTCACTAGAAGATCAAGAGTGGCTCCTCCAATCAGTTTCTCAATTATATGCAAAAGTGTGCTTCTTGGGGCACTAGGATGCACATCTCAGATTCTGGGGTATATTGGTATTAGTTACAGTTCACCAACACTAGCTTCAGCAATTGCTAATCTGATACCTGCTTTCACTTTCATGTTAGCTGTAACTTTCAGGATGGAAAAGTTATCTTCAAAAAGTAGAAGTAGTAATGCAAAGGTAATGGGAAGCATAATCTCAATAGCAGGAGCTTTTGTGTTGACTTTCTACAAAGGACCACCCATCTTGCAATCCTCCGATACTCATATTTCCTCACCACTTGAATTTCTCAAGTCAGTAGATTCAAGTTGGGCCATTGCTGGCGTTCTGCTAACAGTCGACTATTTTATGGGTTCAATATGGTACATTTTACAGGTACATATCTTGAAAGAGTTTCCAGATGAACTAACTTTAGTCTTGTTATACTCCATAGCTGCCACAATCATATCAACAGTTGTAGCTTTGTTATCAGTTCCAAATGCAAGTGCTTGGAAAATAGGACTAAATCTTTCACTCATCTCCATTGTTTCTTCTGGCATTTTCGGAAAGTTAGTAGGAAATATAGTTTCTGCATGGGCATTGCACTTAAAGGGAGCTGTCTATGTAACCTCATTCAAGCCACTACAAATTATTATTTCTGTTGGCTTGGGAATTATATTTCTTGGTGATACTCTTTGTTTAGGAAGTATAATTGGAGCAACGATAATCTCGATTGGCCTTTATGGTGTATTGTGGGGCAAAGCATCAGAAGAGATAGAGGAAGATGTTGGTATCTTGGAGTCACCATCTACAGAGAATGCACCTCTTTTGCAAAGCTATAGAACTGATCAAATTTTCGAAAAGACAAAAGATGGAAATGTTTAA 1101 0.3769 MTRRWSFYMDFLPVVVIIGNECIDMGLLTLFKAATLQGMNNHVFIAYAYAVGTSVLLPVTLFTRRSRVAPPISFSIICKSVLLGALGCTSQILGYIGISYSSPTLASAIANLIPAFTFMLAVTFRMEKLSSKSRSSNAKVMGSIISIAGAFVLTFYKGPPILQSSDTHISSPLEFLKSVDSSWAIAGVLLTVDYFMGSIWYILQVHILKEFPDELTLVLLYSIAATIISTVVALLSVPNASAWKIGLNLSLISIVSSGIFGKLVGNIVSAWALHLKGAVYVTSFKPLQIIISVGLGIIFLGDTLCLGSIIGATIISIGLYGVLWGKASEEIEEDVGILESPSTENAPLLQSYRTDQIFEKTKDGNV 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00196 366 SUPERFAMILY Multidrug resistance efflux transporter EmrE 49 156 - -
Trre12g00196 366 Pfam EamA-like transporter family 25 154 IPR000620 GO:0016020
Trre12g00196 366 SUPERFAMILY Multidrug resistance efflux transporter EmrE 231 327 - -
Trre12g00196 366 PANTHER WAT1-RELATED PROTEIN 12 339 IPR030184 GO:0016020|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00196 Trre-Chr12 1631185 1634819 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00196 1 356 Nodulin-like Gene Family AT3G28050 47.425 1.27e-113 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00196 - - tpra:123906528 662.914