Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00194 ATGACAAGAAGATGGTCCTTTTACATGGATTTTTTGCCAGTTGTGGTGATTATAGGAAATGAATGTATTGACATGGGTTTACTGACTTTGTTCAAAGCAGCAACACTACAAGGAATGAATAATCATGTCTTTATTGCTTATGCTTATGCTGTTGGTACTTCTGTTCTTCTCCCTGTCACTCTTTTCACTAGAAGATCAAGAGTGGTTCCTCCACTCAGTTTCTCAATTATATGCAAAAGTGTGCTTCTTGGGGCAATAGGATGTGCATCTCAGATTTTGGGGTATATAAGTATTAACTCCAGTTCTCCAACACTTGCTTCAGCAATTGCTAATCTAGTACCTGCTTTCACCTTCATGCTAGCTGTCACTTTCAGGATGGAAAAATTAGCTGCAAAGAGTAGAAGTAGTAATGCAAAGGTAATGGGAAGCATAGTCTCAATAGCAGGTGCTTTTGTGTTGACTTTCTATAAAGGACCATCCATCATCAATTCTTCATCACTTCATCAACCAATTGGATTTCTCAAGTCAGTGGATTCAAGTTGGGCCATTGCTGGCATTCTGCTGACAATTGACTATTTTCTGGTTTCACTATGGTACATTTTACAGGTACATATCTTAAAAGAGTTCCCAGATGAACTAACATTAGTCTTGTTATACTCCATAACTGCCACCATCATATCAACAGTTGTAGCTTTGTTATCAGTTCCAAATTCAAGTGCATGGAAAATAGGACTAAATCTCTCATTTATCTCCATTATTTCTTCTGGAATTTTCGGAAAGTTGATAGGTAATATAGTTTCTGCATGGGCAATTCACTTAAAAGGTGCTGTCTATGTAACCTCATTCAAGCCACTGCAAATTGTTATTTCTGTTTATTTGGGTGTTATATTCCTTGGTGATAGTCTTCATGTTGGAAGTATAGTTGGAGCAACAATAATCTCAATTGGTCTTTATGGTGTATTATGGGGAAAAGCAACAGAAGAGATAGAGGAAGATGTTGGTATCTTAGAGTCACCATCTACAGAGAATGCACCTCTTTTGCAAAGTTATAGAACTGATGAAACTATTGAAAAGAAAACAGATAGAAATGTTTAA 1095 0.3671 MTRRWSFYMDFLPVVVIIGNECIDMGLLTLFKAATLQGMNNHVFIAYAYAVGTSVLLPVTLFTRRSRVVPPLSFSIICKSVLLGAIGCASQILGYISINSSSPTLASAIANLVPAFTFMLAVTFRMEKLAAKSRSSNAKVMGSIVSIAGAFVLTFYKGPSIINSSSLHQPIGFLKSVDSSWAIAGILLTIDYFLVSLWYILQVHILKEFPDELTLVLLYSITATIISTVVALLSVPNSSAWKIGLNLSFISIISSGIFGKLIGNIVSAWAIHLKGAVYVTSFKPLQIVISVYLGVIFLGDSLHVGSIVGATIISIGLYGVLWGKATEEIEEDVGILESPSTENAPLLQSYRTDETIEKKTDRNV 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00194 364 PANTHER WAT1-RELATED PROTEIN 12 337 IPR030184 GO:0016020|GO:0022857
Trre12g00194 364 Pfam EamA-like transporter family 25 154 IPR000620 GO:0016020
Trre12g00194 364 SUPERFAMILY Multidrug resistance efflux transporter EmrE 49 156 - -
Trre12g00194 364 SUPERFAMILY Multidrug resistance efflux transporter EmrE 231 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00194 Trre-Chr12 1617108 1620266 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00194 1 356 Nodulin-like Gene Family AT3G28050 47.721 8.87e-115 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00194 - - tpra:123906528 603.979