Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00193 ATGACAAGAAGATGGTCCTTTTACATGGATTTTCTACCAGTTATAGTGATTACAGGAAATGAATTTATTGACATGGGTTTACTCACTTTGTTCAAAGCAGCAACACTTGAAGGAATGAACAATCATGTCTTTGTTGCCTATGCTTATGCTGTTGGTACTTCTGTTCTTCTCCCTGTCACTCTTTTCACTAGAAGATCAAGAGTGGTTCGGGTTCCTCCACTAAGTTTGTCCATCATATGCAAAATTGCGCTTCTTGGTGTAATAGGATGTTCATCTCAAATTTTGGGGTATATTGGTTTTAATTATAGTTCTCCAACACTTGCTTCAGCAATTGGTAATCTTGTACCAGCTTTCACTTTCATGCTAGCTGTCACTTTCAGGATGGAAAAGTTAGGTGCAAAGAGTAGAAGTAGTAATGCTAAGGTAATAGGAAGCATAATATCAATAACTGGTGCTTTTGTGTTGACTTTCTATAAAGGACCATCCATCATGAATTCTTCTACACTTCATCAACCAATTGACTTTCTCAAGTCAGTGGATTCAAGTTGGATCGTTGCTGGCATTCTCCTAACAGTTGCCAATTTTCTCGTTTCCCTAACCTTCATTTTACAGGTACATATTTTGAAAGAGTTCTCCGATGAACTAACTTTAGTCTTGTTATACTCCATAACAGCCACCATCATATCAACAATCATAGCTTTGTTATCAGTTCCAAATTCAAGTGTTTGGAAAATAGGACTAAATCTGTCATTGATCTCCATTGTTTCTTCTGGCATTTTTGGAAAGTTAATAGGCAATACAATTACTGTTTGGTCAGTGCACTTAAAGGGAGCTGTTTATGTAACCTCATTCAGACCACTCCAAATTGTTATTTCTGTTGCCATGAGTGTTATGTTCCTTGGTGATACTCTTCATCTTGGAAGTATAATTGGTGCAACAATCATCTCAATTGGTCTTTATGGTGTATTATGGGGCAAAGCAAAAGAAGAGTTAGAGGAAGATGTTGGTAGCTTAGAGTCACCATATATAGAGAATGAACCTCTATTGCAAAGTTATAGAACTGATCAAACTTTTGAAAATAAAATAGATGGAAATATTTAA 1101 0.3615 MTRRWSFYMDFLPVIVITGNEFIDMGLLTLFKAATLEGMNNHVFVAYAYAVGTSVLLPVTLFTRRSRVVRVPPLSLSIICKIALLGVIGCSSQILGYIGFNYSSPTLASAIGNLVPAFTFMLAVTFRMEKLGAKSRSSNAKVIGSIISITGAFVLTFYKGPSIMNSSTLHQPIDFLKSVDSSWIVAGILLTVANFLVSLTFILQVHILKEFSDELTLVLLYSITATIISTIIALLSVPNSSVWKIGLNLSLISIVSSGIFGKLIGNTITVWSVHLKGAVYVTSFRPLQIVISVAMSVMFLGDTLHLGSIIGATIISIGLYGVLWGKAKEELEEDVGSLESPYIENEPLLQSYRTDQTFENKIDGNI 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00193 366 SUPERFAMILY Multidrug resistance efflux transporter EmrE 49 158 - -
Trre12g00193 366 SUPERFAMILY Multidrug resistance efflux transporter EmrE 234 327 - -
Trre12g00193 366 PANTHER WAT1-RELATED PROTEIN 12 334 IPR030184 GO:0016020|GO:0022857
Trre12g00193 366 Pfam EamA-like transporter family 188 323 IPR000620 GO:0016020
Trre12g00193 366 Pfam EamA-like transporter family 26 156 IPR000620 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00193 Trre-Chr12 1613119 1615852 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00193 1 356 Nodulin-like Gene Family AT3G28050 45.528 4.14e-104 309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00193 - - tpra:123906528 548.51