Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00190 ATGTCAGAAACTATGTATCCTAAATTGTTATTTGAACATACCCATTTGAGAATGTCTTTGATTAATCATCAAATCTATCAAAAAGATGGTTACTTTATGAATTTTCCACCACCATCATCACTATCATCACCAATACAATCTTCATCAAGTTCTTCAACACCAACAACTCCAACACCATCTTCATCTTCTAGTACTAAGATTAGTCCAGCTGTTCTTTTCATCATAGTTGTTCTTGCAGTTCTGTTCTTTATATCTGGTTTACTTCATTTACTTGTTAGATTTCTTATCAAGAATCCATCTTCATCTAATTCTACATCTAATAGACAACATCATAATGAAATTTCAACTTCTGATGCACTTCAAAGACAGCTACAACAGCTTTTTCATCTACATGATTCTGGTTTAGATCAAGCTTTCATTGATGCACTACCTGTTTTTCAATTCAAAGAAATTGTTGGTTTGAATGAACCTTTTGATTGTGCTGTTTGTTTGTGTGAGTTTACTGAGAAAGATAAGTTAAGATTGTTACCTATGTGTAGCCATGCTTTTCATATAAGTTGTATAGATACTTGGCTACTTTCAAACTCAACTTGTCCTCTTTGTAGAGGAACACTTCAAACTCATGGATTTTCGATTGAAAATCCGATGTTCGATTTCGATGATATTAGAGAAGATGGTGATTTTCCTTGTAATGGAGAGAATGGATTTGGTAATAGACAAAAAGAAATTGTAGTTGATGAAGTTGTCGATAAAGGGGTTTTGCCAGTTCGACTGGGGAAATTCAAGAAAATGAATGCGGAAGTTGGTAGAGAGAACGAAGAAGTAGGTGAAACGAGTAGTAGTAATTTGGATGCAAGAAGATGTTTTTCAATGGGATCTTATCAATATGTTGTTGGAAATTCCGAGTTAAGGGTAGCCTTAAATCATGATAGTAGAACTCATAATGATATAAGGGTTAACAAGGGAATGGAAAATGTTAAGAATCTTTGTGTGGAGAGTGATTTGGAAGCAAAGAAGATTAGTAATGTTAGTAAAGGTGAAAGTTTTTCTATTTCTAAGATTTGGTTATGGCCAAGGAAAGGAAAATTTTCTTCAAGTTCTTTAGAAGCTCATAATGGAATGGCATTGCCATCTTATCTTAACAAAGATTTGCAACATCATGGGATGAAGGAAACAGATCGTGTATGA 1188 0.3367 MSETMYPKLLFEHTHLRMSLINHQIYQKDGYFMNFPPPSSLSSPIQSSSSSSTPTTPTPSSSSSTKISPAVLFIIVVLAVLFFISGLLHLLVRFLIKNPSSSNSTSNRQHHNEISTSDALQRQLQQLFHLHDSGLDQAFIDALPVFQFKEIVGLNEPFDCAVCLCEFTEKDKLRLLPMCSHAFHISCIDTWLLSNSTCPLCRGTLQTHGFSIENPMFDFDDIREDGDFPCNGENGFGNRQKEIVVDEVVDKGVLPVRLGKFKKMNAEVGRENEEVGETSSSNLDARRCFSMGSYQYVVGNSELRVALNHDSRTHNDIRVNKGMENVKNLCVESDLEAKKISNVSKGESFSISKIWLWPRKGKFSSSSLEAHNGMALPSYLNKDLQHHGMKETDRV 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00190 395 MobiDBLite consensus disorder prediction 42 65 - -
Trre12g00190 395 ProSiteProfiles Zinc finger RING-type profile. 160 202 IPR001841 -
Trre12g00190 395 SUPERFAMILY RING/U-box 139 207 - -
Trre12g00190 395 CDD RING-H2_EL5-like 159 202 - -
Trre12g00190 395 FunFam RING-H2 finger protein ATL46 122 207 - -
Trre12g00190 395 Pfam Ring finger domain 159 202 IPR001841 -
Trre12g00190 395 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 209 IPR013083 -
Trre12g00190 395 SMART ring_2 160 201 IPR001841 -
Trre12g00190 395 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 62 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00190 Trre-Chr12 1593132 1594319 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00190 58 367 C3H Transcription Factor Family AT2G18650 39.080 1.83e-55 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00190 - - gmx:100787206 489.574