Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00181 ATGGATCTTGAGTCTGTGATTCACAAGAACCCAATTAAGGAGGAATCATGGAAGCATGTGTTGGTTTTAGCTTATCAAAGTTTAGGAGTTGTGTATGGAGATTTAAGCACTTCTCCACTTTATGTTTACAAAAGCACTTTTGCTGAGGATATTAAACATTCAGATACAAATGAAGAAATCTTTGGTGTATTGTCTTTTGTGTTTTGGACATTAACATTGATTCCTCTTCTTAAATATGTGTTCATTGTGTTGAGAGCTGATGATAATGGTGAAGGAGGAACTTTTGCTTTGTACTCTTTGTTATGTAGACATGCTCGTGTGAGTTTGATGCCTAATACTCAGCTTGCAGATGAGGATTTAACACAGTACACAATGGATGAAACTAATGAAATTAATAAGAAAAATGTTGGGTCTAGTTTGAAATCTATGTTGGAAAAACATAGAGTGCTTCAAAGAGTACTTCTTGTTCTTGCTTTGATTGGAACATGCATGGTTATTGGTGATGGTGTTCTCACACCAGCAATTTCTGTTTTTTCTGCTATTTCTGGTTTAGAGCTTTCCATGTCTAAAGAGCAGCACAAATATGTGGAGGTTCCAGTTGCGTGTATAATACTGATATTTTTATTCGCCCTGCAACATTATGGTACACACCGTGTTGGATGTCTTTTCGCACCAGTCGTGTTGACCTGGCTAATATGCATCAGCGCCATCGGTCTTTATAATATAATCCACTGGAATCCACATGTTTATGAAGCTCTCTCCCCATACTACATGTTCAAATTTCTAAAAAAGACTCAATGGGGAGGTTGGATGTCGTTGGGAGGGATTCTCTTATGTATAACAGGCTCAGAAGCTATGTATGCTGATTTAGGACACTTTAATCAATTGTCTATTCAGATTGCTTTCAGTTTCTTGGTATACCCTTCTTTGATCCTAGCATATATGGGACAAGCTGCATATCTTTCCAAGCATCATTCCCTTGAAAGTGATTATAGAATCGGGTTTTATGTGTCTGTACCAGTAAAACTTAGATGGCCTGTTCTTGCAATAGCCATACTTCAAGCTGTGGTTGGAAGTCAAGCTATCATCACCGGAACATTCTCAATAATCAAACAGTGTTCTTCTTTAGGGTGCTTCCCCAAAGTCAAAATCGTTCACACATCATCGAAAATACATGGCCAGATTTACATTCCTGAGATCAACTGGAGTTTGATGCTTCTTTGCCTGGCTGTTACAATTGGATTTCGAGATACCAAACGAATGGGAAACGCAGCAGGTTTGGCCGTCATAACTGTCATGCTGGTAACCACGTGCCTGATGTCTCTAGTTATAGTCTTATGTTGGCACAAAAGTGTTTGGCTAGCTATTTGCTTTATATTGTTCTTTGGCTCCATTGAAGCACTCTACTTCTCTGCATCCCTCATCAAGTTCCTTGAAGGTGCTTGGGTCCCTGTCGCCCTCTCACTCATCTTTCTTATTATCATGTATGTGTGGCACTATGGCACAATTAAGAAGTATGAGTTCGATGTTCAAAATAAGGTCCCTATCAATTGGCTCCTTGGTTTAGGCCCAACTCTAGGAATCGTAAGGGTTAAAGGTATCGGCCTAATACATACTGAGCTTGTGTCTGGAATCCCGGCTATTTTCTCTCATTTTGTTACCAATCTTCCTGCTTTTCATCAAGTTGTAATCTTCCTCTGCGTCAAATCTGTCCCGGTACCGCACGTTGCACCTCGAGAAAGATTCTTAGTTGGTAGAATCGGTCCAAAGGAATATAGGCTTTATAGGTGCATAGCACGGTATGGCTACCGTGACTTTCACAAAGATGATATGGAGTTTGAGAAAGATCTTATATGCAGTATAGCTGAATTTATCCGATCCGATACTTCCGAATACAGATTAGGATTAGGAAACTTCGAAGACGATACTAAGATGACAGTTGTTGGGACTTCATCGTCAAACGCAGAAGGCGTGAGAATTTCAGAAGACGATCAAGATAATAATTCTCAAATAGAAGGAACTTCGGAGTTGAAGGAAGTTAAGTCACCGGAAAAAGTGAAGAAGAGAGTGAGGTTTGTTGTGCCGGATAGTCCGCGGATGGATATGGAAACAAGGGAGGAGTTGCTTGAACTAATGGAAGCAAAGGAAGCAGGAATGGCATTTATAATGAGTCACTCATATGTGAGAGCAAAAAGAGGATCAAGTTGGATGAAGAGAGTTGCTATTAATTATGGTTATGATTTCTTAAGAAGAAACTCCAGAGGACCAACTTATGCTTTAAGTTTACCTCATGCATCTACCTTAGAGGTAGGTATGATCTATCATGTATGA 2331 0.3964 MDLESVIHKNPIKEESWKHVLVLAYQSLGVVYGDLSTSPLYVYKSTFAEDIKHSDTNEEIFGVLSFVFWTLTLIPLLKYVFIVLRADDNGEGGTFALYSLLCRHARVSLMPNTQLADEDLTQYTMDETNEINKKNVGSSLKSMLEKHRVLQRVLLVLALIGTCMVIGDGVLTPAISVFSAISGLELSMSKEQHKYVEVPVACIILIFLFALQHYGTHRVGCLFAPVVLTWLICISAIGLYNIIHWNPHVYEALSPYYMFKFLKKTQWGGWMSLGGILLCITGSEAMYADLGHFNQLSIQIAFSFLVYPSLILAYMGQAAYLSKHHSLESDYRIGFYVSVPVKLRWPVLAIAILQAVVGSQAIITGTFSIIKQCSSLGCFPKVKIVHTSSKIHGQIYIPEINWSLMLLCLAVTIGFRDTKRMGNAAGLAVITVMLVTTCLMSLVIVLCWHKSVWLAICFILFFGSIEALYFSASLIKFLEGAWVPVALSLIFLIIMYVWHYGTIKKYEFDVQNKVPINWLLGLGPTLGIVRVKGIGLIHTELVSGIPAIFSHFVTNLPAFHQVVIFLCVKSVPVPHVAPRERFLVGRIGPKEYRLYRCIARYGYRDFHKDDMEFEKDLICSIAEFIRSDTSEYRLGLGNFEDDTKMTVVGTSSSNAEGVRISEDDQDNNSQIEGTSELKEVKSPEKVKKRVRFVVPDSPRMDMETREELLELMEAKEAGMAFIMSHSYVRAKRGSSWMKRVAINYGYDFLRRNSRGPTYALSLPHASTLEVGMIYHV 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00181 776 NCBIfam potassium uptake protein 23 776 IPR003855 GO:0015079|GO:0016020|GO:0071805
Trre12g00181 776 Pfam K+ potassium transporter 25 605 IPR003855 GO:0015079|GO:0016020|GO:0071805
Trre12g00181 776 MobiDBLite consensus disorder prediction 660 680 - -
Trre12g00181 776 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 13 775 IPR003855 GO:0015079|GO:0016020|GO:0071805
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00181 Trre-Chr12 1499173 1504874 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00181 1 776 Inorganic Solute Cotransporters AT5G14880 77.465 0.0 1225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00181 K03549 - gmx:100793387 1379