Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00179 ATGACTTTATGGATTCTAATTGGAGCAGCAACAATAGGAGTTATTTTGGTAGCATTTATCACTGCATACATCATTTATCTTAGATTCTTCAGATCAGCCTCACTACATAATGAAGTGACATTTGGAAACTTGTTAAAGAAAATTTCTTGTCCAAAAATTCCTATCAAGGAAGTGTATGCTGCCACCAACCATCTCAACGAAATGAATATCATTGGAAAAGGAACTTCAGGTAAAGTCTATAAAGGTACAATGAAAAATAATCAACAAGTTGCAGTGAAGCACATAATCAATGGAGATGGAAATATACAAACTTTTGTTAGAGAAGTTACAAGTTTATCTCATGTCATGCATCCAAATCTTGTTTCTTTGCTTGGTTGTACTGTTGAGGGAGATGATTGTTTTCTAATCTATGAATTATGTCACAATGGAAGCCTTTCAGAATGGCTTTTTGGCAAAAACAAGGTGCTTTCATGGATAAAGAGGTTAGAAATTGCGATTGATAGTGCTCGAGGTATTTGGTTTTTGCACACATATCAAGGAGGTTGTATAGTTCACCGTGACATCAAGCCAACAAATATCCTTCTAGGGTCAAAATTTGAGGCAAAGCTATCAGATTTTGGATTATCTAAAGTTATTGAGATAGGTGAAACATATGCTAGTTCAGAAGTGAGAGGAACTTTTGGATATGTGGATCCTGAGTACCAAAGCAATCACCATGTGAATTCATCTGGTGATGTTTATAGTTTTGGCATAGTACTTCTACAAATTATCTCTGGAAAGAGGGTCATAAATTTGAAATTAAAGAGACCAATGTCACTTAGTAAAATGGCAAAAGCATTCACTAGGAATGGTAGCATTACAGAATTTGCTGACCCTAGACTTGAAGGAAATTATTGTGAAGAAGCATTTGATTTTACACTTGAATTGGCTCTATCATGCACATCCCTTAACCAACAAAGACCATCCATGGAACAAGTTGTCAAAAAACTAGAAGAGGCCTTACTGATTTCAAAGGGGAGGAAGATATTCACTAAAGAAACTCTAGAAGACCTTAATTTTCCTAATGGTCCATGA 1074 0.3538 MTLWILIGAATIGVILVAFITAYIIYLRFFRSASLHNEVTFGNLLKKISCPKIPIKEVYAATNHLNEMNIIGKGTSGKVYKGTMKNNQQVAVKHIINGDGNIQTFVREVTSLSHVMHPNLVSLLGCTVEGDDCFLIYELCHNGSLSEWLFGKNKVLSWIKRLEIAIDSARGIWFLHTYQGGCIVHRDIKPTNILLGSKFEAKLSDFGLSKVIEIGETYASSEVRGTFGYVDPEYQSNHHVNSSGDVYSFGIVLLQIISGKRVINLKLKRPMSLSKMAKAFTRNGSITEFADPRLEGNYCEEAFDFTLELALSCTSLNQQRPSMEQVVKKLEEALLISKGRKIFTKETLEDLNFPNGP 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00179 357 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 5 332 - -
Trre12g00179 357 Pfam Protein kinase domain 67 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g00179 357 ProSitePatterns Protein kinases ATP-binding region signature. 71 93 IPR017441 GO:0005524
Trre12g00179 357 Gene3D Phosphorylase Kinase; domain 1 30 139 - -
Trre12g00179 357 ProSiteProfiles Protein kinase domain profile. 65 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g00179 357 SUPERFAMILY Protein kinase-like (PK-like) 48 330 IPR011009 -
Trre12g00179 357 SMART serkin_6 65 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g00179 357 FunFam probable receptor-like protein kinase At5g59700 140 348 - -
Trre12g00179 357 Gene3D Transferase(Phosphotransferase) domain 1 140 346 - -
Trre12g00179 357 ProSitePatterns Serine/Threonine protein kinases active-site signature. 183 195 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00179 Trre-Chr12 1472046 1474454 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00179 16 350 Receptor kinase-like Gene Family AT1G53420 37.143 5.33e-59 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-2 Trre12g00179 Pkinase 1.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00179 - - mtr:25495195 642.499