Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00178 ATGATCAAATTTTTAACAAGCAAATTCATCACAATATCAATAATTATTCTTCTTCAACAAAACTTAGTATGTTCAAAATGTAGCTGTGAAAATCAAGTAGAAGATTCTTATCATAAAGTATCTGAGGCATTGAAATACAAATTAATTGCTATGGCAACAGTTTTAGTTTCTAGTCTAATTGGTGTATGCATTCCAATTTTTGCAAAAAAATGTTCATATTTAAATCCGGAAAACGATTTTTATTTCTTGATTAAAGCATTTGCTGCTGGGGTGATCCTTGCGACCGGTTTCATACACATACTTCCTGATGCGTTTGAGGCTTTAACGAGTCCTTGTATAGGCGAAAAACCGTGGAAAATGTTTCCTTTCTCGGGTTTTGTAACAATGGTATCAGCTATTGGGACATTGATTATGGAAGCTTTGATCATGGGGTACCAAAAAAGGTCTGAAATGGAAAAAGCTCAGCCGTTGGATGAGGATGACGAGGCTCATGAAGCTAATGCTAGTCATGTTCATAGCTTATCACTTGCATCGGATAAATTAGATTCAACAAATCGCCTCCGGTATACCATAGTTTCTCAGATTTTGGAGCTTGGTATTCTGATGCATTCAATCATTTTAGGGATATCTCTTGGGGTGTCAAGAAGTCCTAAAACAATCAAACCTTTAGTGGCAGTATTATCTTTTCATCAATGCTTTGAAGGAATAGGACTTGGTGGCTGCATTTCTCAGGCACAATTCAAAAATTATAAGGTTGCAATTATGATAATATTCTTTTGTCTCATTTTTCCAATTGGAATTTGCATTGGAATGGGAATATCAAAATTCTACAATGAAAGTAGCCCAAAGTCACTAATAGTTGAAGGGTTTCTACTATCAGCATCTGCAGGGGTTCTCATTAACATGGCACTTGTTGATCTTGTTGCCACTGATTTCATGAACTCTAAAATGCTAATGAATTTTAGGCTACAAATTGGAGCAAGTTTAGCACTTTTTGTAGGGATGCTTTGTATGTCAATTTTGGCATTGGGGGAAGAAGATTCCTAA 1047 0.3563 MIKFLTSKFITISIIILLQQNLVCSKCSCENQVEDSYHKVSEALKYKLIAMATVLVSSLIGVCIPIFAKKCSYLNPENDFYFLIKAFAAGVILATGFIHILPDAFEALTSPCIGEKPWKMFPFSGFVTMVSAIGTLIMEALIMGYQKRSEMEKAQPLDEDDEAHEANASHVHSLSLASDKLDSTNRLRYTIVSQILELGILMHSIILGISLGVSRSPKTIKPLVAVLSFHQCFEGIGLGGCISQAQFKNYKVAIMIIFFCLIFPIGICIGMGISKFYNESSPKSLIVEGFLLSASAGVLINMALVDLVATDFMNSKMLMNFRLQIGASLALFVGMLCMSILALGEEDS 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00178 348 PANTHER ZINC/IRON TRANSPORTER 43 339 - -
Trre12g00178 348 Pfam ZIP Zinc transporter 45 342 IPR003689 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Trre12g00178 348 NCBIfam ZIP zinc/iron transport family 29 343 IPR004698 GO:0005385|GO:0016020|GO:0071577
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00178 Trre-Chr12 1468569 1470439 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00178 4 343 Inorganic Solute Cotransporters AT3G12750 44.540 7.46e-99 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00178 K14709 - jre:108984890 425.246