Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00177 ATGGTGTTCTTCTTGGTCCTATTGCATGCATGTTCTTATGGAAGAAGCATTGAAAGAAGCATTTCCAAAACTGATTTGGAGAATCTTCCATGTTATGATTATGTTGCAAAAGAAAATAGAAGTAACTCTTTGGAATGTGCTATTTGCTTGGAGAATTTTACAATTGGTGATAAGTGTAGATTATTGCCTATTTGTAAGCATAGCTTTCATGCTCAATGTGTTGATAAATGGCTTTTGAAGAATTCACTATGTCCAATTTGTAGATCTAGGGTTTGTATTCTTTGTGCTAACAAAGTTGTTTTAGGTAACAATGGAAGAGAAAGCTCATCTCGAAATGTTGGTATAGAATTACGAGAAAATAATCCAACATTAGAAGTAGAATCACAAGAGCAATAA 396 0.3308 MVFFLVLLHACSYGRSIERSISKTDLENLPCYDYVAKENRSNSLECAICLENFTIGDKCRLLPICKHSFHAQCVDKWLLKNSLCPICRSRVCILCANKVVLGNNGRESSSRNVGIELRENNPTLEVESQEQ 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00177 131 Pfam Ring finger domain 45 88 IPR001841 -
Trre12g00177 131 SUPERFAMILY RING/U-box 36 94 - -
Trre12g00177 131 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 19 127 - -
Trre12g00177 131 ProSiteProfiles Zinc finger RING-type profile. 46 88 IPR001841 -
Trre12g00177 131 SMART ring_2 46 87 IPR001841 -
Trre12g00177 131 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 99 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00177 Trre-Chr12 1467120 1467515 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00177 16 88 C3H Transcription Factor Family AT2G17450 43.750 8.66e-19 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00177 - - mtr:25495193 188.348