Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00171 ATGGAACTCACCGATTCCACCGCCGGTAGTAACAACAACCTCAACAACAACATACCTCCGCCGCCGCAACAACCACCACCACAACCACCGCCGCTTAACAACCACCAAGACACTCGTTCTATTCTCTGCATCGACCTCAACGAGATCCCTTCACCTTCTTCTTCATTCCCCGAAACCCTACTTGACTCAACAATCGACATCGTTCGTACCTATCACGAGAATCCCGCTCCACCTCCAGGTGGTCCTGCTGCTCTTCCTACTGGTACAACTGCCTGCGTCGTTTGTGCTAAATCCTCATCCTCCTCCGGCGGCGGTGGTAATTGTTTAGTTTGTGACGGCTGTGAGCGGAGTTTTCACTTGGCTTGTGCCGGGATTCGAGGCGGCGGTGGTCGACAGGGTGCTGCGAGTATAGGAGAGTGGGTGTGTGGTGAGTGTTTAGCTGGTGGTGTGAAGAGTAAACGGTGGCCGTTGGGTGTGAAGTCGAAGCAGCTTCTTGACATCAATGCTTCACCGCCTAGTGATGTTGATGGGGAGGAGTTGCATGATGCGAGAAAGGACACTATGGGTGATAAATCTCTTGCTGCCAATCAATTCGGTGCTCCAGTGACATATTCGACCTTCAACAATGGCAGTGTCTTTGACTTCCAAAGGGCATCTGGAGCTGTGACACATGCTGTTAGAGTGGGTTATGAGGATATACTGAATCACACCCAATCAATGGCCAGAAGCTTTGCGGCATTACAATCTCAGACTCAGAGTCCAAATGAGTTGGTTTTGCGGGCTCTTAGAGATTTTATTTCTGAACGGCATGGCGTACTGGAGGATGGTTGGCGAGTGGAGCTTAGACCATCAACGATCAGCTCTGACCTGTATGCAATATATTGTGCACCAGATGGAAAGATCTTTGATTCCGTGTATGAAGTAGCTAATTATCTGGGGCTACGGTCTGGCTACAATTCTATGGAATCGGAAACAAGAAATGAAATGTCTCTTTCTATAGGCGGGCCTCAGCTATCCAGAAAAAGGAAGTCTTCTAGGACTCTGGCAGCCAATGGTTTTAAGGATTGCTCTTATGATTTAAGTATGGAATGTGATAATGCTCAGGGGACTGTCCCAAAAGCCACTGAGATTGGAAGAAAAGAGAATGGTCACTCCGACCCTCATCAATCCACTGATGGACTTCCTGTGCAGTTTAAGGACTTCTATGTTCTTTCTTTGGGAAAAGTTGATGGGAGACCTTCATATTATGATGTTAACCTTATCTTTCCTGTGGGCTATAAATCTTGTTGGCATGACAAGATTACTGGCTCTCTTTTTACGTGTGAAGTTTTGGATGGGGGTGATTCTGGACCTATATTTAGGATTAAAAGGTGTTCATGTTCAGAATTTCCTATTCCAGATGGGTCAATCAGCCTTTCAATGCAAAGTAATTGTCAATTTGTGAGCGAAACCAATGAAGGTCAGAGAGAGACTCATGATAGTATGGATTTAGATGGTGATGAGAGTATCCAGATGCTGCTCACAGAACCTTGTGCACCAACAGAAAACGACATCTTCAGTTGTGTTGCCAGTTTTTCAAATGAAGCATATGCATCAGAAGGATTAAGGCCAGTTGCTGGTTCAGTTCAAGATATTACTGGAAATTCATTTGCTGATAATATGAATTTTAGTGATGAAATTGGTGAAATTTTGGTGGAAGAGCAGTCCCTATCCTCAGCATGGAGAGTTATTTCTCAAAAGTTAATCAATTCATGCAAGGATATCTGCAAGAAGAAAGGAAGTCTTAAATTCTATTGTAAACATGTTGAGAGTGAAATGGGCTTATGGGATTTAAGGAATGGAAAAAGTGATACCCACTTCACTTCATTGGATAAATTTTGTGGTTCACCTGTTTCTGTCAGCATTCCAGATACAATTTATGCAGACAATGATCTAAATGGCTTGTATGAGCTATTAGAGAAATGGTTGGAGCAGGATAGATTTGGATTAGATGCTGAATTTGTGCAAGAATTATTGGAAATGAATCTTGGTGTGCAAGACTCTTTGCAATATGAACTTCTGAGTAGTAGAAATAATAGTTCTTCATTGCCAACAGTGGACAATGGTTTCCTAGTGGTCGAATATAAAGGTCAATTAAAATATCAGGATGAAGAAGCAATTCAAGGTTTATATAGAAGGTCTAAGAAGGCAAGATTGACTGAAAAATATGTTAAGGAAGACCGAAGTCTACCTCCTGGGAAACCACTGTGCTCTAGGGCTCCTACTGAACTCATCAGTGACATTTTTCAGGTTTGGGAGCTTTTAGAGCGATTCCGTGAAATTCTAGAACTGAAAGAACCATTGTTATTAGAGGAGCTTGAGAAGGAACTTATCAACCCATGGTTTGATGAATTAGATTTCCCTGAGAAATCTGAGAGGGGAATGGGTGGAAGTCAAGTTTTAACTTCACAAGGGGGTGATGGTGATTGCCGACTAATATGTGAAACTGGTCCATCAGGTTCCACAGGAAGTTCTTTTATTCAAGTGGAAACTGAAGCAATGAAAGAGGAAGCCCAAGTTAAGCTCGCATCTTTCACCTATGTCAGATGCTTTGGTGTAGCTTTGACCAAGGCCCATAATTCATTACTAAGAGTGCTAATAGGTGAACTGCAATCAAAGGTGGCCGCTTTGGTGGATCCGAATTCTGAACCCGGAGAGACCCGGACAAGACGTGGGAGAAGGAAAGATATAGATAGTGCAGTTCCTGCTAAACGAACCAAGGTCAATATGCTTCCTATCAATGAATTGACATGGCCAGAACTAGCTCGGAGATATATCTTGGCTTTCTTATCAATGGATGGTAACCTTGAGTCTGCGGAAATTACTGCCCGTGAAAGTGGTAAAGTATTTCGTTGCTTACGAGGCGATGGTGGTTTGCTGTGCGGTTCCCTCACTGGCGTGGCTGGGATGGAAGCTGATGCACTGTTGCTTGCGGAGGCTACGAAGAAGATTTTTGGTTCCTTGAGCAGAGAAAATGATGTACTCATCATAGAAGAAGAGGAGTCTGATCCTAAGGGTGCTTCTGAAATTGAATTGGCAAATGATGGTAAAATTCCTGAATGGGCGCAGATGCTGGAACCTGTCAGAAAGCTACCAACAAATGTGGGAACCCGAATCAGAAAGTGTGTTAATGATGCTTTAGATAAGAATCCGCCAGATTGGGCGAGGAAAATACTGTTGCACTCAATTAGTAAGGAAGTGTACAAGGGCAATGCATCTGGACCAACAAAGAAAGCAGTTATTTCAGTGTTGAAGGAGGTAACTGAAGGAGTGCAGTCAAATCCCGAAAAGGGAAGGAAAAAGAAGATTGTTATATCTATTTCTGACATTATTATGAAACAATGCCGCATTGTATTACGTCGTGCAGCTGCTGCAGATGATTCAAAAGTTTTTTGCAATTTGTTAGGAAGAAAATTAATAAATTCTTCTGATAATGATGATGAGGGGCTTCTTGGAACTCCAGCTATGGTGGCCCGCCCTCTTGACTTCCGGACTATTGACCTAAGGTTGGCTTCTGGAGCGTATGGTGGATCTTGTGAGGCTTTTCTCGAGGATGTACGTGAGCTCTGGAGCATTGTTCGTGTTGCTTTTGCGGATCAACCTGATTTAGTTGAACTGTCAGAAAAATTATCCCAGAATTTTGAATTTTTATACAACAACGAGGTTGTCACTTATGTTGAAAAGTTCACTGATTATGCTAAAGCAGGATGCATCAGTGATCAAATGAAAAAAGATATTGACGATTTCATTGCATCAATAAGTCAGATTCCAAAGGCCCCTTGGGATGAGGGGGTTTGCAAAGTATGTGGAATTGACAGGGATGATGACAGCGTTTTACTTTGCGACAAATGTGATGCTGAGTATCATAAATATTGCTTGATTCCTCCACTTGCAAGGATCCCTGAAGGAAACTGGTACTGTCCATCTTGTATTGGTGGTAAACATGCAACTCAAGATGCCACAGAACGTGCACAGATTGCTGGAAAACGTAGAAGTAAAAAATTCCAGGGAGAAATTAATTGTCTTTACTTGGAAGCACTAACTCATTTATCGGCTGTAATTGAAGAAAAAGAATATTGGGAGTACAGCGTGGGAGAGAGAGCGCTTCTTCTCAAGTTTTTGTGTGATGAGTTGCTCAATTCTTCCCTGATACGACAGCATCTTGAGCAGTGTGCAGAGTTGTCTGTTGAGTTACATCAGAAATTGCGTGCACTTTCTGTAGAGTGGAAAAGCCTGAAAATTAAGGAAGATGTTTTATCCACAAAAGCTGCAAAATTTGACACATTGTCTCAAATTACCACCGGGGAATTTGGTCTTAAGGAAGGGTTCACATCATTGTTCTCAAATACTAGTAAATGTCTGGTTAAGCCACATACTACAACCACCAATCCTAGTGGTCATGGAGCATTTGTTGATAGTCTACCTTCAGAAGAGATTCCCAAAGTGAAGTGTAGGTTCAACAGTGTTGATAAAAGCATATCTGTGACACATTCAGATTCTGATAACCAATATATGAATTCTATAGAAGGACAACTTAGGGCTGTTCCTGTGGCTGTGGAGTCTCAATGTACAGATAAATCCCTCAAGTCTTTTCCATCGTCAAATCATATGCCTCAAGAAATAAATGGCTACAGTGGAGCAACTCATATTCGGGGTAACTACCAGAAATGTGAGGTAAGGGATGTATCTACTTGTGTGACATACCAGCAAGGACAATGTGTGCCTGTTGAAGTTTCCCAAAATGCTGTGAATGAGTCGGAAACATACCACCTTGAGCTCAATGCCGTCAAGCATAATATTTCACTGCTGCAGGAGTCTATAAATAGTGTAGGATCACAGCTACTGAAGCTCTCTGTTCGCCGGGATTTTTTGGGTATTGATTCCATTTGTCGACTGTACTGGGCTTTGGCTACACCCAGAGGACGCTCACGTATAGTTGTTGATGCAAGTGCTGTTCTTCAGCATGGAAGAGGATCGTCTGTTAGCAAAGATTGTGCAGAGAAGTTTACTGCTCTGCAGCATTGTGCATTATTTGAGAAGGATAACTATAAGATGTTAGGGCTGGTCAATGATTCCTCTCCTTTAATGTCCCAACAACTTGATGCTTTAGGCAGTAGTTCACCGTGGATTGTTTATGAAACAGATTCAGAAATTGAAGAGCTATTGGGTTGGTTAAAAGATTGTGACCCTAAAGAAAAAGAGCTGAGAGATTCCATTATGCTGAGGCCAAAATATAGACCTCAAGAGTTTATTAATGCACACACTGAAGGTCAGGTTGAGGACCAAGGACCGGTTTATTTGCCAAGAAATACAGTATCTAACTCTCTTGTTACAAAGGCCACTTCTTTGCTGGAAAAGAATTATGGTCCCTTCTTTGAGTTGGATACTGCCGAGGTGTTGAAGAAGCAGAGTAAAAAGGCCAGGACAACTAATGATGAAAAGCTGTATAGATGTGAGTGCCTAGAACCCATATGGTCTTCTAGGAAACATTGCCTGTATTGTCACAAAACCTTTTTAAGCGATGTTGAGTTTGAGGGACACAATGATGGAAAATGTAATGCAGGACTTCTGGCCTTGGAGAGGAATAAAGAAAAAAATGGATCTTCTAAAGGCAGAGGGAACTTGAAATGTGATGCCTCACATGAAAAATCCAGAGCTGATGCAGAGACAGATGGAACCTCAATTAATAGATGTTCCAAGCTAAGTTCGAGATTGATAAAGTTTTCAAATGAAAATTCCTCTTGCCCATTTAAGTTCGAAGATATATGCTCAAAATTTGTGACAAATGATTCCAACAAGGAAGTTGTCAGAGAAATTGGTCTTATTGGTTCAGATGGTGTCCCATCCTTTGTGCCTTCCATATCTCCTTTTGTTAGTGATGATACACCATTCTTAACCCTAAAGGATGGTAGCATTGTTGGTGGTGCTTCTAAAGCTTCAGAAAGCCTGATTTCTCAGGAAAAAACGGATGGATCTGGCATATGCCATGACCATAAGTCAGGCAAATCTGCTGAAAGTTTAGCCACAAATGAAAGCAATGAAGCAGGGGAATCTAACAAATCATCTTTGGGAGAACAGAGAGATGGAAAGTCATCTTTTTGTAGTTCTGCTTCAGATAAGGGAGTTGATGGCTGCTGTGTGGTTCCTTTGTCGTCGTTAAAACCATTAGTTGGAAAAGTTTCTCATATTTTGAAGCAACTAAAGATTAATCTGCTTGATATGGATGCTGCACTTCCGGATGTTGCTTTAAGACCATCAAAGGCACAGTTGGACAGAAGACAGGCCTGGCGTGCATTTGTCAAATCTGCAGCGACTATATATGAGATGATTCAGGCAATAATTACACTGGAGGATATGATTAAGATGGAGTTCTTAAGGAATGACTGGTGGTACTGGTCATCATTCTCAGCTGCTGCAAAGTCTTCTACTTTGCCTTCTCTTGCTCTTCGCATTTATTCCCTTGATTCAGCCATTCTGTACGAGAAAATGCCCAATTCAAGTTTAACGGACAGCTCTGATCCTCCTGCCGCAGTGGAACTGAAACCAGTGATCACAGTGGATGCAGATAAATCCAAAGCAAGCCGGAAGTCAAACAGGAAAAGGAAGGAACTAGACAGTTAA 6660 0.4216 MELTDSTAGSNNNLNNNIPPPPQQPPPQPPPLNNHQDTRSILCIDLNEIPSPSSSFPETLLDSTIDIVRTYHENPAPPPGGPAALPTGTTACVVCAKSSSSSGGGGNCLVCDGCERSFHLACAGIRGGGGRQGAASIGEWVCGECLAGGVKSKRWPLGVKSKQLLDINASPPSDVDGEELHDARKDTMGDKSLAANQFGAPVTYSTFNNGSVFDFQRASGAVTHAVRVGYEDILNHTQSMARSFAALQSQTQSPNELVLRALRDFISERHGVLEDGWRVELRPSTISSDLYAIYCAPDGKIFDSVYEVANYLGLRSGYNSMESETRNEMSLSIGGPQLSRKRKSSRTLAANGFKDCSYDLSMECDNAQGTVPKATEIGRKENGHSDPHQSTDGLPVQFKDFYVLSLGKVDGRPSYYDVNLIFPVGYKSCWHDKITGSLFTCEVLDGGDSGPIFRIKRCSCSEFPIPDGSISLSMQSNCQFVSETNEGQRETHDSMDLDGDESIQMLLTEPCAPTENDIFSCVASFSNEAYASEGLRPVAGSVQDITGNSFADNMNFSDEIGEILVEEQSLSSAWRVISQKLINSCKDICKKKGSLKFYCKHVESEMGLWDLRNGKSDTHFTSLDKFCGSPVSVSIPDTIYADNDLNGLYELLEKWLEQDRFGLDAEFVQELLEMNLGVQDSLQYELLSSRNNSSSLPTVDNGFLVVEYKGQLKYQDEEAIQGLYRRSKKARLTEKYVKEDRSLPPGKPLCSRAPTELISDIFQVWELLERFREILELKEPLLLEELEKELINPWFDELDFPEKSERGMGGSQVLTSQGGDGDCRLICETGPSGSTGSSFIQVETEAMKEEAQVKLASFTYVRCFGVALTKAHNSLLRVLIGELQSKVAALVDPNSEPGETRTRRGRRKDIDSAVPAKRTKVNMLPINELTWPELARRYILAFLSMDGNLESAEITARESGKVFRCLRGDGGLLCGSLTGVAGMEADALLLAEATKKIFGSLSRENDVLIIEEEESDPKGASEIELANDGKIPEWAQMLEPVRKLPTNVGTRIRKCVNDALDKNPPDWARKILLHSISKEVYKGNASGPTKKAVISVLKEVTEGVQSNPEKGRKKKIVISISDIIMKQCRIVLRRAAAADDSKVFCNLLGRKLINSSDNDDEGLLGTPAMVARPLDFRTIDLRLASGAYGGSCEAFLEDVRELWSIVRVAFADQPDLVELSEKLSQNFEFLYNNEVVTYVEKFTDYAKAGCISDQMKKDIDDFIASISQIPKAPWDEGVCKVCGIDRDDDSVLLCDKCDAEYHKYCLIPPLARIPEGNWYCPSCIGGKHATQDATERAQIAGKRRSKKFQGEINCLYLEALTHLSAVIEEKEYWEYSVGERALLLKFLCDELLNSSLIRQHLEQCAELSVELHQKLRALSVEWKSLKIKEDVLSTKAAKFDTLSQITTGEFGLKEGFTSLFSNTSKCLVKPHTTTTNPSGHGAFVDSLPSEEIPKVKCRFNSVDKSISVTHSDSDNQYMNSIEGQLRAVPVAVESQCTDKSLKSFPSSNHMPQEINGYSGATHIRGNYQKCEVRDVSTCVTYQQGQCVPVEVSQNAVNESETYHLELNAVKHNISLLQESINSVGSQLLKLSVRRDFLGIDSICRLYWALATPRGRSRIVVDASAVLQHGRGSSVSKDCAEKFTALQHCALFEKDNYKMLGLVNDSSPLMSQQLDALGSSSPWIVYETDSEIEELLGWLKDCDPKEKELRDSIMLRPKYRPQEFINAHTEGQVEDQGPVYLPRNTVSNSLVTKATSLLEKNYGPFFELDTAEVLKKQSKKARTTNDEKLYRCECLEPIWSSRKHCLYCHKTFLSDVEFEGHNDGKCNAGLLALERNKEKNGSSKGRGNLKCDASHEKSRADAETDGTSINRCSKLSSRLIKFSNENSSCPFKFEDICSKFVTNDSNKEVVREIGLIGSDGVPSFVPSISPFVSDDTPFLTLKDGSIVGGASKASESLISQEKTDGSGICHDHKSGKSAESLATNESNEAGESNKSSLGEQRDGKSSFCSSASDKGVDGCCVVPLSSLKPLVGKVSHILKQLKINLLDMDAALPDVALRPSKAQLDRRQAWRAFVKSAATIYEMIQAIITLEDMIKMEFLRNDWWYWSSFSAAAKSSTLPSLALRIYSLDSAILYEKMPNSSLTDSSDPPAAVELKPVITVDADKSKASRKSNRKRKELDS 2219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00171 2219 MobiDBLite consensus disorder prediction 2018 2043 - -
Trre12g00171 2219 ProSitePatterns Zinc finger PHD-type signature. 92 145 IPR019786 -
Trre12g00171 2219 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1265 1349 IPR013083 -
Trre12g00171 2219 MobiDBLite consensus disorder prediction 1876 1902 - -
Trre12g00171 2219 CDD PHD1_Lid2p_like 1278 1323 - -
Trre12g00171 2219 MobiDBLite consensus disorder prediction 2002 2043 - -
Trre12g00171 2219 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 149 IPR013083 -
Trre12g00171 2219 ProSiteProfiles FYR domain FYRN motif profile. 393 446 IPR003888 GO:0005634
Trre12g00171 2219 Gene3D - 394 505 - -
Trre12g00171 2219 Gene3D - 1120 1241 IPR036427 GO:0005515
Trre12g00171 2219 MobiDBLite consensus disorder prediction 18 33 - -
Trre12g00171 2219 MobiDBLite consensus disorder prediction 1 37 - -
Trre12g00171 2219 ProSiteProfiles Zinc finger PHD-type profile. 89 148 IPR019787 -
Trre12g00171 2219 MobiDBLite consensus disorder prediction 1 17 - -
Trre12g00171 2219 SUPERFAMILY FYVE/PHD zinc finger 90 156 IPR011011 -
Trre12g00171 2219 ProSiteProfiles Zinc finger PHD-type profile. 1276 1326 IPR019787 -
Trre12g00171 2219 PANTHER OS02G0192300 PROTEIN 30 2215 - -
Trre12g00171 2219 Pfam Methyl-CpG binding domain 264 317 IPR001739 GO:0003677
Trre12g00171 2219 Pfam PHD-finger 1278 1324 IPR019787 -
Trre12g00171 2219 Pfam PHD-finger 92 146 IPR019787 -
Trre12g00171 2219 ProSitePatterns Zinc finger PHD-type signature. 1279 1323 IPR019786 -
Trre12g00171 2219 SUPERFAMILY Bromodomain 1113 1233 IPR036427 GO:0005515
Trre12g00171 2219 SUPERFAMILY FYVE/PHD zinc finger 1265 1328 IPR011011 -
Trre12g00171 2219 SMART PHD_3 1278 1324 IPR001965 -
Trre12g00171 2219 SMART PHD_3 91 146 IPR001965 -
Trre12g00171 2219 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 1358 1402 IPR028942 -
Trre12g00171 2219 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 263 336 IPR001739 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00171 Trre-Chr12 1389382 1401217 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00171 36 2216 C2H2 Transcription Factor Family AT3G01460 44.119 0.0 1651
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre12g00171 MBD 5.9e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00171 K22768 - gmx:100820223 3017.64