Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00170 ATGATCATGGAACTCACCGATTCCACCGCCGGTAGTAACAACAACCTCAACAACAACATACCTCCGCCGCCGCAACAACCACCACCACAACCACCGCCGCTTAACAACCACCAAGACACTCGTTCTATTCTCTGCATCGACCTCAACGAGATCCCTTCACCTTCTTCTTCATTCCCCGAAACCCTACTTGACTCAACAATCGACATCGTTCGTACCTATCACGAGAATCCCGCTCCACCTCCAGGTGGTCCTGCTGCTCTTCCTACTGGTACAACTGCCTGCGTCGTTTGTGCTAAATCCTCATCCTCCTCCGGCGGCGGTGGTAATTGTTTAGTTTGTGACGGCTGTGAGCGGAGTTTTCACTTGGCTTGTGCCGGGATTCGAGGCGGCGGTGGTCGACAGGGTGCTGCGAGTATAGGAGAGTGGGTGTGTGGTGAGTGTTTAGCTGGTGGTGTGAAGAGTAAACGGTGGCCGTTGGGTGTGAAGTCGAAGCAGCTTCTTGACATCAATGCTTCACCGCCTAGTGATGTTGATGGGGAGGAGTTGCATGATGCGAGAAAGGACACTATGGGTGATAAATCTCTTGCTGCCAATCAATTCGGTGCTCCAGTGACATATTCGACCTTCAACAATGGCAGTGTCTTTGACTTCCAAAGGGCATCTGGAGCTGTGACACATGCTGTTAGAGTGGGTTATGAGGATATACTGAATCACACCCAATCAATGGCCAGAAGCTTTGCGGCATTACAATCTCAGACTCAGAGTCCAAATGAGTTGGTTTTGCGGGCTCTTAGAGATTTTATTTCTGAACGGCATGGCGTACTGGAGGATGGTTGGCGAGTGGAGCTTAGACCATCAACGATCAGCTCTGACCTGTATGCAATATATTGTGCACCAGATGGAAAGATCTTTGATTCCGTGTATGAAGTAGCTAATTATCTGGGGCTACGGTCTGGCTACAATTCTATGGAATCGGAAACAAGAAATGAAATGTCTCTTTCTATAGGCGGGCCTCAGCTATCCAGAAAAAGGAAGTCTTCTAGGACTCTGGCAGCCAATGGTTTTAAGGATTGCTCTTATGATTTAAGTATGGAATGTGATAATGCTCAGGGGACTGTCCCAAAAGCCACTGAGATTGGAAGAAAAGAGAATGGTCACTCCGACCCTCATCAATCCACTGATGGACTTCCTGTGCAGTTTAAGGACTTCTATGTTCTTTCTTTGGGAAAAGTTGATGGGAGACCTTCATATTATGATGTTAACCTTATCTTTCCTGTGGGCTATAAATCTTGTTGGCATGACAAGATTACTGGCTCTCTTTTTACGTGTGAAGTTTTGGATGGGGGTGATTCTGGACCTATATTTAGGATTAAAAGGTGTTCATGTTCAGAATTTCCTATTCCAGATGGGTCAATCAGCCTTTCAATGCAAAGTAATTGTCAATTTGTGAGCGAAACCAATGAAGGTCAGAGAGAGACTCATGATAGTATGGATTTAGATGGTGATGAGAGTATCCAGATGCTGCTCACAGAACCTTGTGCACCAACAGAAAACGACATCTTCAGTTGTGTTGCCAGTTTTTCAAATGAAGCATATGCATCAGAAGGATTAAGGCCAGTTGCTGGTTCAGTTCAAGATATTACTGGAAATTCATTTGCTGATAATATGAATTTTAGTGATGAAATTGGTGAAATTTTGGTGGAAGAGCAGTCCCTATCCTCAGCATGGAGAGTTATTTCTCAAAAGTTAATCAATTCATGCAAGGATATCTGCAAGAAGAAAGGAAGTCTTAAATTCTATTGTAAACATGTTGAGAGTGAAATGGGCTTATGGGATTTAAGGAATGGAAAAAGTGATACCCACTTCACTTCATTGGATAAATTTTGTGGTTCACCTGTTTCTGTCAGCATTCCAGATACAATTTATGCAGACAATGATCTAAATGGCTTGTATGAGCTATTAGAGAAATGGTTGGAGCAGGATAGATTTGGATTAGATGCTGAATTTGTGCAAGAATTATTGGAAATGAATCTTGGTGTGCAAGACTCTTTGCAATATGAACTTCTGAGTAGTAGAAATAATAGTTCTTCATTGCCAACAGTGGACAATGGTTTCCTAGTGGTCGAATATAAAGGTCAATTAAAATATCAGGATGAAGAAGCAATTCAAGGTTTATATAGAAGGTCTAAGAAGGCAAGATTGACTGAAAAATATGTTAAGGAAGACCGAAGTCTACCTCCTGGGAAACCACTGTGCTCTAGGGCTCCTACTGAACTCATCAGTGACATTTTTCAGGTTTGGGAGCTTTTAGAGCGATTCCGTGAAATTCTAGAACTGAAAGAACCATTGTTATTAGAGGAGCTTGAGAAGGAACTTATCAACCCATGGTTTGATGAATTAGATTTCCCTGAGAAATCTGAGAGGGGAATGGGTGGAAGTCAAGTTTTAACTTCACAAGGGGGTGATGGTGATTGCCGACTAATATGTGAAACTGGTCCATCAGGTTCCACAGGAAGTTCTTTTATTCAAGTGGAAACTGAAGCAATGAAAGAGGAAGCCCAAGTTAAGCTCGCATCTTTCACCTATGTCAGATGCTTTGGTGTAGCTTTGACCAAGGCCCATAATTCATTACTAAGAGTGCTAATAGGTGAACTGCAATCAAAGGTGGCCGCTTTGGTGGATCCGAATTCTGAACCCGGAGAGACCCGGACAAGACGTGGGAGAAGGAAAGATATAGATAGTGCAGTTCCTGCTAAACGAACCAAGGTCAATATGCTTCCTATCAATGAATTGACATGGCCAGAACTAGCTCGGAGATATATCTTGGCTTTCTTATCAATGGATGGTAACCTTGAGTCTGCGGAAATTACTGCCCGTGAAAGTGGTAAAGTATTTCGTTGCTTACGAGGCGATGGTGGTTTGCTGTGCGGTTCCCTCACTGGCGTGGCTGGGATGGAAGCTGATGCACTGTTGCTTGCGGAGGCTACGAAGAAGATTTTTGGTTCCTTGAGCAGAGAAAATGATGTACTCATCATAGAAGAAGAGGAGTCTGATCCTAAGGGTGCTTCTGAAATTGAATTGGCAAATGATGGTAAAATTCCTGAATGGGCGCAGATGCTGGAACCTGTCAGAAAGCTACCAACAAATGTGGGAACCCGAATCAGAAAGTGTGTTAATGATGCTTTAGATAAGAATCCGCCAGATTGGGCGAGGAAAATACTGTTGCACTCAATTAGTAAGGAAGTGTACAAGGGCAATGCATCTGGACCAACAAAGAAAGCAGTTATTTCAGTGTTGAAGGAGGTAACTGAAGGAGTGCAGTCAAATCCCGAAAAGGGAAGGAAAAAGAAGATTGTTATATCTATTTCTGACATTATTATGAAACAATGCCGCATTGTATTACGTCGTGCAGCTGCTGCAGATGATTCAAAAGTTTTTTGCAATTTGTTAGGAAGAAAATTAATAAATTCTTCTGATAATGATGATGAGGGGCTTCTTGGAACTCCAGCTATGGTGGCCCGCCCTCTTGACTTCCGGACTATTGACCTAAGGTTGGCTTCTGGAGCGTATGGTGGATCTTGTGAGGCTTTTCTCGAGGATGTACGTGAGCTCTGGAGCATTGTTCGTGTTGCTTTTGCGGATCAACCTGATTTAGTTGAACTGTCAGAAAAATTATCCCAGAATTTTGAATTTTTATACAACAACGAGGTTGTCACTTATGTTGAAAAGTTCACTGATTATGCTAAAGCAGGATGCATCAGTGATCAAATGAAAAAAGATATTGACGATTTCATTGCATCAATAAGTCAGATTCCAAAGGCCCCTTGGGATGAGGGGGTTTGCAAAGTATGTGGAATTGACAGGGATGATGACAGCGTTTTACTTTGCGACAAATGTGATGCTGAGTATCATAAATATTGCTTGATTCCTCCACTTGCAAGGATCCCTGAAGGAAACTGGTACTGTCCATCTTGTATTGGTGGTAAACATGCAACTCAAGATGCCACAGAACGTGCACAGATTGCTGGAAAACGTAGAAGTAAAAAATTCCAGGGAGAAATTAATTGTCTTTACTTGGAAGCACTAACTCATTTATCGGCTGTAATTGAAGAAAAAGAATATTGGGAGTACAGCGTGGGAGAGAGAGCGCTTCTTCTCAAGTTTTTGTGTGATGAGTTGCTCAATTCTTCCCTGATACGACAGCATCTTGAGCAGTGTGCAGAGTTGTCTGTTGAGTTACATCAGAAATTGCGTGCACTTTCTGTAGAGTGGAAAAGCCTGAAAATTAAGGAAGATGTTTTATCCACAAAAGCTGCAAAATTTGACACATTGTCTCAAATTACCACCGGGGAATTTGGTCTTAAGGAAGGGTTCACATCATTGTTCTCAAATACTAGTAAATGTCTGGTTAAGCCACATACTACAACCACCAATCCTAGTGGTCATGGAGCATTTGTTGATAGTCTACCTTCAGAAGAGATTCCCAAAGTGAAGTGTAGGTTCAACAGTGTTGATAAAAGCATATCTGTGACACATTCAGATTCTGATAACCAATATATGAATTCTATAGAAGGACAACTTAGGGCTGTTCCTGTGGCTGTGGAGTCTCAATGTACAGATAAATCCCTCAAGTCTTTTCCATCGTCAAATCATATGCCTCAAGAAATAAATGGCTACAGTGGAGCAACTCATATTCGGGGTAACTACCAGAAATGTGAGGTAAGGGATGTATCTACTTGTGTGACATACCAGCAAGGACAATGTGTGCCTGTTGAAGTTTCCCAAAATGCTGTGAATGAGTCGGAAACATACCACCTTGAGCTCAATGCCGTCAAGCATAATATTTCACTGCTGCAGGAGTCTATAAATAGTGTAGGATCACAGCTACTGAAGCTCTCTGTTCGCCGGGATTTTTTGGGTATTGATTCCATTTGTCGACTGTACTGGGCTTTGGCTACACCCAGAGGACGCTCACGTATAGTTGTTGATGCAAGTGCTGTTCTTCAGCATGGAAGAGGATCGTCTGTTAGCAAAGATTGTGCAGAGAAGTTTACTGCTCTGCAGCATTGTGCATTATTTGAGAAGGATAACTATAAGATGTTAGGGCTGGTCAATGATTCCTCTCCTTTAATGTCCCAACAACTTGATGCTTTAGGCAGTAGTTCACCGTGGATTGTTTATGAAACAGATTCAGAAATTGAAGAGCTATTGGGTTGGTTAAAAGATTGTGACCCTAAAGAAAAAGAGCTGAGAGATTCCATTATGCTGAGGCCAAAATATAGACCTCAAGAGTTTATTAATGCACACACTGAAGGTCAGGTTGAGGACCAAGGACCGGTTTATTTGCCAAGAAATACAGTATCTAACTCTCTTGTTACAAAGGCCACTTCTTTGCTGGAAAAGAATTATGGTCCCTTCTTTGAGTTGGATACTGCCGAGGTGTTGAAGAAGCAGAGTAAAAAGGCCAGGACAACTAATGATGAAAAGCTGTATAGATGTGAGTGCCTAGAACCCATATGGTCTTCTAGGAAACATTGCCTGTATTGTCACAAAACCTTTTTAAGCGATGTTGAGTTTGAGGGACACAATGATGGAAAATGTAATGCAGGACTTCTGGCCTTGGAGAGGAATAAAGAAAAAAATGGATCTTCTAAAGGCAGAGGGAACTTGAAATGTGATGCCTCACATGAAAAATCCAGAGCTGATGCAGAGACAGATGGAACCTCAATTAATAGATGTTCCAAGCTAAGTTCGAGATTGATAAAGTTTTCAAATGAAAATTCCTCTTGCCCATTTAAGTTCGAAGATATATGCTCAAAATTTGTGACAAATGATTCCAACAAGGAAGTTGTCAGAGAAATTGGTCTTATTGGTTCAGATGGTGTCCCATCCTTTGTGCCTTCCATATCTCCTTTTGTTAGTGATGATACACCATTCTTAACCCTAAAGGATGGTAGCATTGTTGGTGGTGCTTCTAAAGCTTCAGAAAGCCTGATTTCTCAGGAAAAAACGGATGGATCTGGCATATGCCATGACCATAAGTCAGGCAAATCTGCTGAAAGTTTAGCCACAAATGAAAGCAATGAAGCAGGGGAATCTAACAAATCATCTTTGGGAGAACAGAGAGATGGAAAGTCATCTTTTTGTAGTTCTGCTTCAGATAAGGGAGTTGATGGCTGCTGTGTGGTTCCTTTGTCGTCGTTAAAACCATTAGTTGGAAAAGTTTCTCATATTTTGAAGCAACTAAAGATTAATCTGCTTGATATGGATGCTGCACTTCCGGATGTTGCTTTAAGACCATCAAAGGCACAGTTGGACAGAAGACAGGCCTGGCGTGCATTTGTCAAATCTGCAGCGACTATATATGAGATGATTCAGGCAATAATTACACTGGAGGATATGATTAAGATGGAGTTCTTAAGGAATGACTGGTGGTACTGGTCATCATTCTCAGCTGCTGCAAAGTCTTCTACTTTGCCTTCTCTTGCTCTTCGCATTTATTCCCTTGATTCAGCCATTCTGTACGAGAAAATGCCCAATTCAAGTTTAACGGACAGCTCTGATCCTCCTGCCGCAGTGGAACTGAAACCAGTGATCACAGTGGATGCAGATAAATCCAAAGCAAGCCGGAAGTCAAACAGGAAAAGGAAGGAACTAGACAGTTAA 6666 0.4215 MIMELTDSTAGSNNNLNNNIPPPPQQPPPQPPPLNNHQDTRSILCIDLNEIPSPSSSFPETLLDSTIDIVRTYHENPAPPPGGPAALPTGTTACVVCAKSSSSSGGGGNCLVCDGCERSFHLACAGIRGGGGRQGAASIGEWVCGECLAGGVKSKRWPLGVKSKQLLDINASPPSDVDGEELHDARKDTMGDKSLAANQFGAPVTYSTFNNGSVFDFQRASGAVTHAVRVGYEDILNHTQSMARSFAALQSQTQSPNELVLRALRDFISERHGVLEDGWRVELRPSTISSDLYAIYCAPDGKIFDSVYEVANYLGLRSGYNSMESETRNEMSLSIGGPQLSRKRKSSRTLAANGFKDCSYDLSMECDNAQGTVPKATEIGRKENGHSDPHQSTDGLPVQFKDFYVLSLGKVDGRPSYYDVNLIFPVGYKSCWHDKITGSLFTCEVLDGGDSGPIFRIKRCSCSEFPIPDGSISLSMQSNCQFVSETNEGQRETHDSMDLDGDESIQMLLTEPCAPTENDIFSCVASFSNEAYASEGLRPVAGSVQDITGNSFADNMNFSDEIGEILVEEQSLSSAWRVISQKLINSCKDICKKKGSLKFYCKHVESEMGLWDLRNGKSDTHFTSLDKFCGSPVSVSIPDTIYADNDLNGLYELLEKWLEQDRFGLDAEFVQELLEMNLGVQDSLQYELLSSRNNSSSLPTVDNGFLVVEYKGQLKYQDEEAIQGLYRRSKKARLTEKYVKEDRSLPPGKPLCSRAPTELISDIFQVWELLERFREILELKEPLLLEELEKELINPWFDELDFPEKSERGMGGSQVLTSQGGDGDCRLICETGPSGSTGSSFIQVETEAMKEEAQVKLASFTYVRCFGVALTKAHNSLLRVLIGELQSKVAALVDPNSEPGETRTRRGRRKDIDSAVPAKRTKVNMLPINELTWPELARRYILAFLSMDGNLESAEITARESGKVFRCLRGDGGLLCGSLTGVAGMEADALLLAEATKKIFGSLSRENDVLIIEEEESDPKGASEIELANDGKIPEWAQMLEPVRKLPTNVGTRIRKCVNDALDKNPPDWARKILLHSISKEVYKGNASGPTKKAVISVLKEVTEGVQSNPEKGRKKKIVISISDIIMKQCRIVLRRAAAADDSKVFCNLLGRKLINSSDNDDEGLLGTPAMVARPLDFRTIDLRLASGAYGGSCEAFLEDVRELWSIVRVAFADQPDLVELSEKLSQNFEFLYNNEVVTYVEKFTDYAKAGCISDQMKKDIDDFIASISQIPKAPWDEGVCKVCGIDRDDDSVLLCDKCDAEYHKYCLIPPLARIPEGNWYCPSCIGGKHATQDATERAQIAGKRRSKKFQGEINCLYLEALTHLSAVIEEKEYWEYSVGERALLLKFLCDELLNSSLIRQHLEQCAELSVELHQKLRALSVEWKSLKIKEDVLSTKAAKFDTLSQITTGEFGLKEGFTSLFSNTSKCLVKPHTTTTNPSGHGAFVDSLPSEEIPKVKCRFNSVDKSISVTHSDSDNQYMNSIEGQLRAVPVAVESQCTDKSLKSFPSSNHMPQEINGYSGATHIRGNYQKCEVRDVSTCVTYQQGQCVPVEVSQNAVNESETYHLELNAVKHNISLLQESINSVGSQLLKLSVRRDFLGIDSICRLYWALATPRGRSRIVVDASAVLQHGRGSSVSKDCAEKFTALQHCALFEKDNYKMLGLVNDSSPLMSQQLDALGSSSPWIVYETDSEIEELLGWLKDCDPKEKELRDSIMLRPKYRPQEFINAHTEGQVEDQGPVYLPRNTVSNSLVTKATSLLEKNYGPFFELDTAEVLKKQSKKARTTNDEKLYRCECLEPIWSSRKHCLYCHKTFLSDVEFEGHNDGKCNAGLLALERNKEKNGSSKGRGNLKCDASHEKSRADAETDGTSINRCSKLSSRLIKFSNENSSCPFKFEDICSKFVTNDSNKEVVREIGLIGSDGVPSFVPSISPFVSDDTPFLTLKDGSIVGGASKASESLISQEKTDGSGICHDHKSGKSAESLATNESNEAGESNKSSLGEQRDGKSSFCSSASDKGVDGCCVVPLSSLKPLVGKVSHILKQLKINLLDMDAALPDVALRPSKAQLDRRQAWRAFVKSAATIYEMIQAIITLEDMIKMEFLRNDWWYWSSFSAAAKSSTLPSLALRIYSLDSAILYEKMPNSSLTDSSDPPAAVELKPVITVDADKSKASRKSNRKRKELDS 2221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00170 2221 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 265 338 IPR001739 GO:0003677
Trre12g00170 2221 MobiDBLite consensus disorder prediction 2004 2045 - -
Trre12g00170 2221 SUPERFAMILY FYVE/PHD zinc finger 92 158 IPR011011 -
Trre12g00170 2221 MobiDBLite consensus disorder prediction 1 39 - -
Trre12g00170 2221 MobiDBLite consensus disorder prediction 1 19 - -
Trre12g00170 2221 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1267 1351 IPR013083 -
Trre12g00170 2221 ProSiteProfiles Zinc finger PHD-type profile. 91 150 IPR019787 -
Trre12g00170 2221 Gene3D - 396 507 - -
Trre12g00170 2221 CDD PHD1_Lid2p_like 1280 1325 - -
Trre12g00170 2221 Gene3D - 1122 1243 IPR036427 GO:0005515
Trre12g00170 2221 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 151 IPR013083 -
Trre12g00170 2221 ProSiteProfiles FYR domain FYRN motif profile. 395 448 IPR003888 GO:0005634
Trre12g00170 2221 ProSitePatterns Zinc finger PHD-type signature. 94 147 IPR019786 -
Trre12g00170 2221 Pfam Methyl-CpG binding domain 266 319 IPR001739 GO:0003677
Trre12g00170 2221 MobiDBLite consensus disorder prediction 20 35 - -
Trre12g00170 2221 SUPERFAMILY FYVE/PHD zinc finger 1267 1330 IPR011011 -
Trre12g00170 2221 MobiDBLite consensus disorder prediction 2020 2045 - -
Trre12g00170 2221 SMART PHD_3 1280 1326 IPR001965 -
Trre12g00170 2221 SMART PHD_3 93 148 IPR001965 -
Trre12g00170 2221 SUPERFAMILY Bromodomain 1115 1235 IPR036427 GO:0005515
Trre12g00170 2221 ProSitePatterns Zinc finger PHD-type signature. 1281 1325 IPR019786 -
Trre12g00170 2221 Pfam PHD-finger 94 148 IPR019787 -
Trre12g00170 2221 Pfam PHD-finger 1280 1326 IPR019787 -
Trre12g00170 2221 MobiDBLite consensus disorder prediction 1878 1904 - -
Trre12g00170 2221 PANTHER OS02G0192300 PROTEIN 32 2217 - -
Trre12g00170 2221 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 1360 1404 IPR028942 -
Trre12g00170 2221 ProSiteProfiles Zinc finger PHD-type profile. 1278 1328 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00170 Trre-Chr12 1389382 1401223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00170 38 2218 C2H2 Transcription Factor Family AT3G01460 44.119 0.0 1651
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre12g00170 MBD 5.9e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00170 K22768 - gmx:100820223 3021.11