Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00150 ATGTGGCGGCGGAAGATATTACTCGCAAGGGGAGTGCATGACAACGAAGGCAGTGACAATGAACATAACAATGCTCTAGCTAATCACAATCAACAAAATTCAAGTCCTAATGGATTCCATGAAGAGAGAGCAATTCAATCTACTAATAAAGAGATTACAAGATCGGCAATTATAAGATTATTGCCTCCGGTTAAAAGTTTTCTTGATGATGAAAATAATAAAGATTATTGTCCTATTTGCTTGGAGAGATTTAAAAAAGGAGTATTGATTCAACCTTTTAGAGTGTGCAACCATGAATTTCATGTCTCGTGTCTATTCTTATGGTTACATGATCAAGGGAAAACTACTTGTCCGGTTTGTCGCCAAGATTTGTAA 375 0.3627 MWRRKILLARGVHDNEGSDNEHNNALANHNQQNSSPNGFHEERAIQSTNKEITRSAIIRLLPPVKSFLDDENNKDYCPICLERFKKGVLIQPFRVCNHEFHVSCLFLWLHDQGKTTCPVCRQDL 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00150 124 Pfam Ring finger domain 76 121 IPR001841 -
Trre12g00150 124 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 124 IPR013083 -
Trre12g00150 124 MobiDBLite consensus disorder prediction 21 42 - -
Trre12g00150 124 SUPERFAMILY RING/U-box 67 124 - -
Trre12g00150 124 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 38 121 - -
Trre12g00150 124 SMART ring_2 77 120 IPR001841 -
Trre12g00150 124 ProSiteProfiles Zinc finger RING-type profile. 77 121 IPR001841 -
Trre12g00150 124 MobiDBLite consensus disorder prediction 13 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00150 Trre-Chr12 1250066 1250533 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00150 68 124 C3H Transcription Factor Family AT5G47610 36.842 2.95e-08 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00150 - K22378 ahf:112718325 91.2781