Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00149 ATGGCAAACACACCTAGTAATATTCCATCTAATACAAAAGCTTGGGTTTATTCTCAATATGGTAACATTGAACAAAATCTAAAGTTTGATCCTAATGTACCTACACCACACCCTAAGGAAGATCAAGTTCTCATCAAGGTTGTGGCTGCTGCCCTTAATCCTGTTGATACTAAGAGGGCTCTTGGTTATTTCAAGGACATTGACTCTCCTTTGCCAACTGTGCCAGGATATGATGTTGCTGGTGTGGTGGTTAGTGTGGGAGATCAAGTGAAGAAATTTAAGGTTGGAGATGAAGTTTATGGTGATATTAATGAGAACACTATAGACCATCCAAAAACTGTTGGTTCTGTGGCAGAGTATACTGTTGCTGAGGAAAAAGTACTTGCTCACAAACCATCTAATTTGAGCTTTGTTGAAGCTGCTAGCCTCCCTTTAGCAATAATAACTGCTTATCAAGGACTTGAAAGAGTTGAATTTTCTTCTGGTCAATCTATACTTGTTCTTGGTGGTGCCGGCGGAGTTGGATCTCTTGTTATTCAGCTAGCCAAGCATGTGTTTGGGGCATCTAGAATTGCAGCTACTGCTAGCACATCAAAACTTGAATTTTTGAAGAACTTGGGAGTAGACTTGGCTATTGATTATACTAAAGAGAATTATGAAGAACTTGCAGAAAAATTTGATGTGGTGTATGATGCAGTAGGTGAAAGTGAGAGGGGGCTAAAGGCAGTTAATGAAGGTGGAAAAGTTGTGACAATAGTGCCGCCCGGAACACCGCCGGCTATCCCTTTCGGACTCACTTCAGATGGAGCTTTGTTAGAGAAATTGCAACCTTACTTGGAGAGTGGAAAAGTGAAGCCAATATTGGATCCTAAGAGTCCCTTTCCATTTTCTCAGACTGTGGAAGCATTTTCTCATCTCAATACTAATAGAGCTATTGGGAAAATTGTTATACATCCTATTCCTTGA 966 0.4037 MANTPSNIPSNTKAWVYSQYGNIEQNLKFDPNVPTPHPKEDQVLIKVVAAALNPVDTKRALGYFKDIDSPLPTVPGYDVAGVVVSVGDQVKKFKVGDEVYGDINENTIDHPKTVGSVAEYTVAEEKVLAHKPSNLSFVEAASLPLAIITAYQGLERVEFSSGQSILVLGGAGGVGSLVIQLAKHVFGASRIAATASTSKLEFLKNLGVDLAIDYTKENYEELAEKFDVVYDAVGESERGLKAVNEGGKVVTIVPPGTPPAIPFGLTSDGALLEKLQPYLESGKVKPILDPKSPFPFSQTVEAFSHLNTNRAIGKIVIHPIP 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00149 321 SMART PKS_ER_names_mod 21 317 IPR020843 GO:0016491
Trre12g00149 321 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 135 260 IPR036291 -
Trre12g00149 321 CDD MDR_like_2 13 317 - -
Trre12g00149 321 Pfam Zinc-binding dehydrogenase 206 317 - -
Trre12g00149 321 SUPERFAMILY GroES-like 10 167 IPR011032 -
Trre12g00149 321 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 162 183 IPR002364 GO:0008270|GO:0016491
Trre12g00149 321 Gene3D - 154 268 - -
Trre12g00149 321 Gene3D - 19 317 - -
Trre12g00149 321 Pfam Alcohol dehydrogenase GroES-like domain 41 103 IPR013154 -
Trre12g00149 321 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 4 321 IPR044626 GO:0016628
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00149 Trre-Chr12 1244937 1246832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00149 68 231 Monolignol Biosynthesis Gene Families AT1G72680 28.646 4.04e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00149 K18980 - gmx:100791274 489.574