Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00102 ATGGACAAAAAACCGTGCAACTCATCTCAAGATCCTGAAGTGAGAAAGGGGCCATGGACCATGGAAGAAGACTTGATTTTAATCAATTATATTGCAAATCATGGTGAAGGTGTTTGGAATTCCTTAGCCAAAGCTGCTGGTCTTAAACGTACAGGAAAGAGTTGCAGACTTCGATGGTTAAACTACCTTCGTCCCGATGTTAGAAGAGGGAATATTACACCTGAGGAGCAACTTTTGATCATGGAACTTCATGCAAAGTGGGGAAATAGGTGGTCCAAAATTGCAAAGCATCTTCCAGGAAGAACTGACAATGAGATTAAGAATTTTTGGAGGACAAGGATACAAAAGCACATTAAACAAAATGATAATCCTCATCAACAAAATTATCAACCACAAATGAGTTTAGAGATAAATGATCATCATCATTCAAGTAGTAGCCAAGTTTCCAACATTGTAGAGCCAATGGAAACTTATTCTCCAACTTCATATCACCAAGGAACTTTGGAACCATTTCCAACTCAATTTCCAATAATCAATGATCATCCCTCAAGTTGTTGTACAAATGACAACAATAACAACAATTATTGGAGCATGGAAGACATCTGGTCAATGCAATTACTCAATGGAGATTAA 633 0.3744 MDKKPCNSSQDPEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKHIKQNDNPHQQNYQPQMSLEINDHHHSSSSQVSNIVEPMETYSPTSYHQGTLEPFPTQFPIINDHPSSCCTNDNNNNNYWSMEDIWSMQLLNGD 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00102 210 FunFam Myb-related protein 305 73 148 - -
Trre12g00102 210 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Trre12g00102 210 Gene3D - 16 68 - -
Trre12g00102 210 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Trre12g00102 210 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 11 150 IPR044676 GO:0003700|GO:0006355|GO:0043565
Trre12g00102 210 SMART sant 15 65 IPR001005 -
Trre12g00102 210 SMART sant 68 116 IPR001005 -
Trre12g00102 210 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Trre12g00102 210 Pfam Myb-like DNA-binding domain 69 112 IPR001005 -
Trre12g00102 210 FunFam Myb transcription factor 16 68 - -
Trre12g00102 210 CDD SANT 73 112 IPR001005 -
Trre12g00102 210 Gene3D - 73 143 - -
Trre12g00102 210 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Trre12g00102 210 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Trre12g00102 210 CDD SANT 18 63 IPR001005 -
Trre12g00102 210 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00102 Trre-Chr12 817909 822521 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00102 4 210 MYB Transcription Factor Family AT3G01530 56.667 1.40e-77 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre12g00102 Myb_DNA-binding 7.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00102 K09422 - gmx:778048 338.191