Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00092 ATGGCTGCTACAGCAACTGCCTCAGTGGGTCCACGGTATGCGCCACCAGATCCTACACTTCCTAAACCATGGAAAGGTCTCGTGGATGGCAAGACGGGCTATCTTTACTTTTGGAATCCTGAGACTAATGTAACTCAGTATGAGAGGCCTTCGAGCTCAGCTGCCCCACCGAAGTCTTCGTCAGTCCCTAACTCTTCTGTCCAGGTTCAGCAATCGTCTCAAGGACGTGGTCGTAGTCCTGATTTCAGTGATAGGTATGATAGGAATGGAAATGGTGGATCAAACGAAGGAGGATCCCGGAACCATCAGAGTTCCAAAGGTGACAGTTTTAGCTCTCATGATAATGTTGCAAATGGAACACATTTTGCTGGAAATGTTAGTTCTATCAAAGCTCATGTGGCACCAGATACAGGACCTGCATTATCTCCAGAGGCTTATAGACGTCGTCATGAGATCACTGTTACTGGAGATAATGTTCCTGCACCTGTTACATCATTTGCGTCCTCTGGCTTTCCATCTGAGATTCTTAGAGAGGTACAAAATGCTGGGTTCTCAGCCCCAACTCCAATTCAGGCACAATCATGGCCCATTGCCCTTCAAAGTAAAGACATAGTTGCCATTGCTAAAACTGGTTCAGGAAAAACCTTGGGGTATTTGCTGCCAGCATTTATTCATCTCAAGCGTACCAATAATAACGCCAAAATGGGCCCCACTGTATTGGTACTTTCACCAACAAGGGAGTTGGCAACACAGATTCAAGATGAAGCTGTGAAGTTTAGTAAAACATCAAGAATTGCCTGCACCTGCTTGTATGGAGGAGCACCAAAGGGTCCTCAATTGAGAGATATTGACCGTGGAGCAGATATTGTGGTAGCCACTCCTGGTCGCCTGAATGATATTCTTGAGATGAGGAGAATCAGTCTTCACCAGGTCTCTTACCTAGTGCTAGATGAGGCAGACCGGATGCTGGACATGGGTTTTGAACCTCAAATTAGGAAGATTGTGAAAGAGGTGCCTGCTCGCAGGCAAACTCTCATGTATACTGCAACATGGCCTAAGGAGGTTAGGAGAATTGCAGCTGATCTGCTGGTCAATCCTGTCCAAGTGAACATTGGCAATGTAGACGAGCTTGTTGCTAATAAGTCCATCACTCAGCATATTGAAGTTTTGGCACATATGGAGAAACAGAGACGACTGGAAAGTATTTTGCGGTCCCAGGATCAAGGATCAAAGATAATAATTTTTTGTTCTACCAAGAAAATGTGTGATCAACTTGCTCGTAATCTTACACGCCAGTTTGGAGCTGCTGCTATACATGGGGATAAATCCCAGGCTGATAGGGATCATGTGTTGAATCAGTTTCGAAGTGGAAGGACTCCTGTACTTGTAGCCACAGATGTTGCAGCTCGTGGACTGGATGTCAAAGACATTAGAGTGGTTGTCAACTATGACTTCCCTACAGGAGTGGAGGATTATGTTCATAGGATTGGAAGGACTGGGAGGGCTGGAGCCACTGGTATAGCTTACACTTTCTTTGGGGACCAGGATGCTAAACATGCTTCTGATCTCATCAAAATCTTAGAGGGTGCAAACCAGAAAGTCCCTCCAGAACTACGTGAGTTGTCATCCAGGGGTGGTGGTGGGTTTGGCAGATCCAAATATCGTTCTGGTGGTCGTGGTGACTCTGGATTCGGTGCAAAGAGCTATGACTCTGGGTATGGTGGAAGGGGTAATGATGCAGGATATGGTGGAAGAGGCAGTGATTCAAATTATGGAGGCAGGGGTGGTGGATATGGGTCTTCTGCTGCTTTTGGCAGAGGTGGAGGTCGTGGATTTGACTATGACTCACAGAGGAATGAAAGAGATCGAAGTCCCGATAGAGGATCTAGCTGGAGTGATCGCTTCAAAACTGTCAATCGTGAACGCAGCCGCAGTCCTGCCAAGGCTGCACCATCTCAAAATGCCCCTGTCAGCTTTCACCAAGCAATGATGCAACGCAATGGAGGGGGTGGTGATCGCAACAAGAGCTTTAACCGGGAGCGAAGCCGCAGTCCTAGTCCTTATAGACAGGACAGGGCTTCTTCCCCTGGTGGCGGTAGGTCTAACAACAGTCCTAAGAAAGGGTGGGGAGGATCTTCAGGTGATGGAAGAAATGGTGGTTACAATGGAGAATTAGAGGAAGGGATGATTCCTGATGAAGAAGGAATGATTGGTCATGATGATTCTATATATCAAAGTGCTAATTAG 2247 0.4677 MAATATASVGPRYAPPDPTLPKPWKGLVDGKTGYLYFWNPETNVTQYERPSSSAAPPKSSSVPNSSVQVQQSSQGRGRSPDFSDRYDRNGNGGSNEGGSRNHQSSKGDSFSSHDNVANGTHFAGNVSSIKAHVAPDTGPALSPEAYRRRHEITVTGDNVPAPVTSFASSGFPSEILREVQNAGFSAPTPIQAQSWPIALQSKDIVAIAKTGSGKTLGYLLPAFIHLKRTNNNAKMGPTVLVLSPTRELATQIQDEAVKFSKTSRIACTCLYGGAPKGPQLRDIDRGADIVVATPGRLNDILEMRRISLHQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPKEVRRIAADLLVNPVQVNIGNVDELVANKSITQHIEVLAHMEKQRRLESILRSQDQGSKIIIFCSTKKMCDQLARNLTRQFGAAAIHGDKSQADRDHVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGIAYTFFGDQDAKHASDLIKILEGANQKVPPELRELSSRGGGGFGRSKYRSGGRGDSGFGAKSYDSGYGGRGNDAGYGGRGSDSNYGGRGGGYGSSAAFGRGGGRGFDYDSQRNERDRSPDRGSSWSDRFKTVNRERSRSPAKAAPSQNAPVSFHQAMMQRNGGGGDRNKSFNRERSRSPSPYRQDRASSPGGGRSNNSPKKGWGGSSGDGRNGGYNGELEEGMIPDEEGMIGHDDSIYQSAN 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00092 748 SUPERFAMILY WW domain 12 51 IPR036020 GO:0005515
Trre12g00092 748 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 236 519 IPR027417 -
Trre12g00092 748 SMART helicmild6 423 503 IPR001650 -
Trre12g00092 748 FunFam probable ATP-dependent RNA helicase DDX17 139 372 - -
Trre12g00092 748 MobiDBLite consensus disorder prediction 613 643 - -
Trre12g00092 748 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 195 369 IPR014001 -
Trre12g00092 748 CDD WW 21 49 IPR001202 GO:0005515
Trre12g00092 748 Gene3D - 374 544 IPR027417 -
Trre12g00092 748 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 398 542 IPR001650 -
Trre12g00092 748 Gene3D - 16 65 - -
Trre12g00092 748 ProSitePatterns WW/rsp5/WWP domain signature. 24 50 IPR001202 GO:0005515
Trre12g00092 748 MobiDBLite consensus disorder prediction 600 748 - -
Trre12g00092 748 MobiDBLite consensus disorder prediction 46 79 - -
Trre12g00092 748 MobiDBLite consensus disorder prediction 535 582 - -
Trre12g00092 748 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 113 542 - -
Trre12g00092 748 MobiDBLite consensus disorder prediction 688 709 - -
Trre12g00092 748 MobiDBLite consensus disorder prediction 673 687 - -
Trre12g00092 748 MobiDBLite consensus disorder prediction 646 661 - -
Trre12g00092 748 MobiDBLite consensus disorder prediction 88 121 - -
Trre12g00092 748 SMART ww_5 19 52 IPR001202 GO:0005515
Trre12g00092 748 CDD SF2_C_DEAD 383 512 - -
Trre12g00092 748 ProSiteProfiles WW/rsp5/WWP domain profile. 18 52 IPR001202 GO:0005515
Trre12g00092 748 FunFam ATP-dependent RNA helicase RhlB 373 545 - -
Trre12g00092 748 Gene3D - 141 373 IPR027417 -
Trre12g00092 748 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 315 323 IPR000629 -
Trre12g00092 748 MobiDBLite consensus disorder prediction 1 26 - -
Trre12g00092 748 MobiDBLite consensus disorder prediction 46 121 - -
Trre12g00092 748 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 164 192 IPR014014 GO:0003724
Trre12g00092 748 SMART ultradead3 183 386 IPR014001 -
Trre12g00092 748 Pfam Helicase conserved C-terminal domain 395 503 IPR001650 -
Trre12g00092 748 Pfam WW domain 20 50 IPR001202 GO:0005515
Trre12g00092 748 Pfam DEAD/DEAH box helicase 188 357 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00092 Trre-Chr12 725417 729351 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00092 162 541 Eukaryotic Initiation Factors Gene Family AT3G19760 33.420 6.88e-64 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00092 K12823 - gmx:100816455 1045.8