Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00089 ATGCAAACTTTCTTTGTTTCATCTTCTCCTTCAACACCAAGATTTCACCCTTTTCAAAATTCTCATTATCACTCCTTTTCTTCTTCACCACTTAGACTCACCATTGATGGATTTTCATGCCCACCTTTTTCTTTGTTCCAAACTGTTAGAAAGTCTTCACCTTTTCTCATTGCAAATCCAAAAATTTCATCTTTTAGAGTCTCTGCTGCTTCTGTTCCAGAGGCACAAAGTGATGAACCAACTCAACCTTCTGAGTTGATTCAGTCTTTGCAGCTTAGTTTCATGTTTGCTACTTGGTATCTCTTGAATATTTACTTCAACATTTATAACAAACAGGTTCTAAAAGTCTATCCATTTCCAGCAACAGTTACAGCATTTCAATTTGGCTTTGCTTCATTGGTGATTAATTTGATCTGGACTTTGAATCTTCATCCAAGACCAAACATCAGTAAGTCAAAGCTTGTAGCAATACTTCCACTCGCTGTGGCTCATACATTAGGGAACCTGTTGACCAACATTAGTCTCGGGAAAGTTGCTGTTTCTTTCACTCACACCATCAAAGCTATGGAACCTTTCTTCACTGTTGTTCTTTCATCCCTTCTCCTCGGTCAGATGCCAACTTTATGGGTGTTTTCTTCTCTTTTACCTATTGTTGGGGGAGTGGCATTAGCATCAATGACCGAAGTATCTTTCAATTGGATTGGATTCAGCACTGCAATGGCATCAAACCTTACGAATCAATCACGGAATGTTTTGAGCAAAAAACTAATGTCTAATGAAGAGGACGCGTTGGACAACATCAACCTATATTCAGTTATAACCATCATTTCCTTTTTCCTGTTGTTACCATTTGCTATATTTTTGGAGGGTGTCAAGTTTACTCCTTCATACCTGCAATCTGCTGCAAGCCAAGGATTGAATGTTAGAGAGCTATGCATAAGATCAGTTTTGGCTGCATTCTGCTTCCATGCATACCAGCAGGTTTCATATGGAATATTAGAGAAGGTATCACCTGTGACACACTCGGTCGGAAATTGTGTGAAGCGTGTCGTTGTTATCGTCTCTTCAGTTATCTTCTTCCAAACTCCTGTCTCACCTATTAATGCACTTGGAACTGCTATTGCACTTGTTGGTGTTTTCTTGTATTCAAGAGCAAAGAGGATTAAGCCAATGCCAAAAACAAATACAGCATAA 1194 0.3894 MQTFFVSSSPSTPRFHPFQNSHYHSFSSSPLRLTIDGFSCPPFSLFQTVRKSSPFLIANPKISSFRVSAASVPEAQSDEPTQPSELIQSLQLSFMFATWYLLNIYFNIYNKQVLKVYPFPATVTAFQFGFASLVINLIWTLNLHPRPNISKSKLVAILPLAVAHTLGNLLTNISLGKVAVSFTHTIKAMEPFFTVVLSSLLLGQMPTLWVFSSLLPIVGGVALASMTEVSFNWIGFSTAMASNLTNQSRNVLSKKLMSNEEDALDNINLYSVITIISFFLLLPFAIFLEGVKFTPSYLQSAASQGLNVRELCIRSVLAAFCFHAYQQVSYGILEKVSPVTHSVGNCVKRVVVIVSSVIFFQTPVSPINALGTAIALVGVFLYSRAKRIKPMPKTNTA 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00089 397 SUPERFAMILY Multidrug resistance efflux transporter EmrE 132 227 - -
Trre12g00089 397 Pfam Triose-phosphate Transporter family 91 383 IPR004853 -
Trre12g00089 397 PANTHER SOLUTE CARRIER FAMILY 35 92 387 - -
Trre12g00089 397 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 90 393 IPR004696 GO:0016020|GO:0022857|GO:0055085
Trre12g00089 397 SUPERFAMILY Multidrug resistance efflux transporter EmrE 275 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00089 Trre-Chr12 710801 717210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00089 7 394 Antiporters AT5G33320 58.416 3.56e-150 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00089 K15283 - gmx:100819280 575.859