Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00079 ATGGCTGGAAGGTTGATTTCTTGTGCGATGCGGTTTCGAGGAGAACGATTGTGCATAACTGCATACAAGGCCCTGCTTCTTCTACCATTCGTTCTCACCAGGGTTATTATTATTTCTTTGCTTGCTTTCGTTTGTGCTGTAATTGAAATTTGTGGGATTGGTGGATTGCTCCTAAGAAGCCAGCTCAGTTGCCTTCCAAACCACTTCCTCCTTCTCAGGCTGGTTCACATTGTACAACGAGGTGCTGTACGGCCTTTGATAGATATGCTTCAGTCTCCCAATGTTCAGCTCAAAGAAATTTCTGCTTTTGCATTGGGAAGATTGGCACAGGACACACATAACCATGCTGGTATTGCACACACTAGCGGCTTAATGCCATTGCTGAAGCTTCTTGACTCAAAAAACAGGTCTTTGCAACATAATGCTGCTTTTGCTCTTTATGGCCTTGCAGAGAATGAGGATAATGTGCCCGACTTTATTAGAGTAGGTGGAATTAAGAGACTCCAGGTTTATTATTCAAGCAACTAA 528 0.4337 MAGRLISCAMRFRGERLCITAYKALLLLPFVLTRVIIISLLAFVCAVIEICGIGGLLLRSQLSCLPNHFLLLRLVHIVQRGAVRPLIDMLQSPNVQLKEISAFALGRLAQDTHNHAGIAHTSGLMPLLKLLDSKNRSLQHNAAFALYGLAENEDNVPDFIRVGGIKRLQVYYSSN 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00079 175 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 122 164 IPR000225 GO:0005515
Trre12g00079 175 SUPERFAMILY ARM repeat 76 169 IPR016024 -
Trre12g00079 175 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 81 123 IPR000225 GO:0005515
Trre12g00079 175 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 75 169 IPR044282 -
Trre12g00079 175 Gene3D - 62 174 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00079 Trre-Chr12 640288 642450 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00079 75 168 U-box Gene Family AT5G40140 35.106 3.99e-10 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00079 - - psat:127102415 170.629