Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00076 ATGGCCACTCCAAATTCCAAATCGATCTTCAACATCGTAACTTCACGAGAGCTTAATTCCTTTCAAGTTCGAAAACGACCTCGCATGGATGGTTGGGTTCATGGCGTTTTCGAGATGGGAGCTTTAGCCACACAGCACAATGGTGAAGATATTGTTCCTCTTGCTCTCTCTTTTGCTAAGACTTCGAAATTTTCGCACATTCTTGCTTTATCTAATGAGGAAGGATATATTAGCTTGTTTGATACTCGCCGTAAATTCTTACAGCCCTCGTGCCATGAAGAAAACGCAGATAATGCAAGGATTTGTGAATGGAGTGCACATAATAATGCTGTTTTTGATGTCAATTGGATTAAGGATGATACACAGATCCTTACTGCTTCTGGTGATCAAACGGTGAAGATATGGGATGTTCAAGAAAAGAAGTGTCTTGGAGTGTTAACAGGGCACACGGGGAGTGTGAAATCTTTTTGTTCTCATCCAACTAATTCCGATATTATCGTCTCTTGTTCAAGAGATGGATCCTTTCGGCTTTGGGACTTAAGATGTAACTCCAATACTAAGAATAGGCATGGAGAAGTTAGCATATGTTCAACGGCTGTTGTAAAAGGAGCACATCTCTCATATCAAATATACCGAGTAAGGGGGCGCAAGGCCAGGGGTTCTTCCATGAGTATTACTTCTGCCCTTTGGCTCAAGGATGAAGTTTCCATAGCCACTGCTGGGGCAGCAGATAGTGTGCTGAAGTTTTGGGATACCAGAAATTTAAAAAGTATTGTCACGCAAACATGTCCTCAACCTGAGTCAACAGGAAAGCAAATATTTCATGGTATATCTAGCCTGTCCCAAGATGACAGTGGACTTTTGCTCTCAGCTTCCTGCATGGATAGCCGAGTTTATCTATATAATACACTTCAACTTGAAAAGGGTCCTTTAAGACATTTTGAAGGAGGTCGTATAGATTCATTTTTTGTGAAGGCTGCAATTAGCCCCGATGCGTATAGCATAGTGTGTGGTTCTAGTACCGGAAAAGCATATGTTTGGCAGGTTGACAAGCCTCAAGTGCCACCTACTATTTTGAAGAGCCATGAAGATGACGAGGAAGTTACCGCAGTTGACTGGTGTCGCTCTGATATCGGAAAATTAGCAACTGCATCTGATGATTTCACAATCCGGATATGGAGTCAACGCAGTTATGTTAGCACAACAAAGCATCCGTTTTCCATTCGAAGAAGAGTTATGGCCATGCCTAGAACAGAGTGCAAAATGCTATTAAACAATGAAGAAATTTGCCCCAAGTCAGGTCTCGATGGTCTCGAAACGCTGCACCATCCAATGAAGTCAGCCACTCCAATCACACCACCTAAAACGACTACATCAGAAGGCCATAAGAACCAGCTTTCATCAGAATTTGATCTAACCATATCTCCTAAAAACACTCCAGAGTCCGCTTTGAAAAGTCCTTCATCTGTATTGAACCCACCACCCTCCCTAAAAAGAACTATCCGCGACTACTTTGTAGCATCTTCATGA 1530 0.4235 MATPNSKSIFNIVTSRELNSFQVRKRPRMDGWVHGVFEMGALATQHNGEDIVPLALSFAKTSKFSHILALSNEEGYISLFDTRRKFLQPSCHEENADNARICEWSAHNNAVFDVNWIKDDTQILTASGDQTVKIWDVQEKKCLGVLTGHTGSVKSFCSHPTNSDIIVSCSRDGSFRLWDLRCNSNTKNRHGEVSICSTAVVKGAHLSYQIYRVRGRKARGSSMSITSALWLKDEVSIATAGAADSVLKFWDTRNLKSIVTQTCPQPESTGKQIFHGISSLSQDDSGLLLSASCMDSRVYLYNTLQLEKGPLRHFEGGRIDSFFVKAAISPDAYSIVCGSSTGKAYVWQVDKPQVPPTILKSHEDDEEVTAVDWCRSDIGKLATASDDFTIRIWSQRSYVSTTKHPFSIRRRVMAMPRTECKMLLNNEEICPKSGLDGLETLHHPMKSATPITPPKTTTSEGHKNQLSSEFDLTISPKNTPESALKSPSSVLNPPPSLKRTIRDYFVASS 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00076 509 ProSiteProfiles Trp-Asp (WD) repeats profile. 146 188 IPR001680 GO:0005515
Trre12g00076 509 MobiDBLite consensus disorder prediction 450 495 - -
Trre12g00076 509 SMART WD40_4 211 251 IPR001680 GO:0005515
Trre12g00076 509 SMART WD40_4 307 348 IPR001680 GO:0005515
Trre12g00076 509 SMART WD40_4 97 136 IPR001680 GO:0005515
Trre12g00076 509 SMART WD40_4 267 302 IPR001680 GO:0005515
Trre12g00076 509 SMART WD40_4 139 179 IPR001680 GO:0005515
Trre12g00076 509 SMART WD40_4 352 394 IPR001680 GO:0005515
Trre12g00076 509 MobiDBLite consensus disorder prediction 445 497 - -
Trre12g00076 509 SUPERFAMILY WD40 repeat-like 62 400 IPR036322 GO:0005515
Trre12g00076 509 Pfam WD domain, G-beta repeat 141 179 IPR001680 GO:0005515
Trre12g00076 509 Pfam WD domain, G-beta repeat 357 394 IPR001680 GO:0005515
Trre12g00076 509 Pfam WD domain, G-beta repeat 103 136 IPR001680 GO:0005515
Trre12g00076 509 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 104 138 - -
Trre12g00076 509 Gene3D - 40 190 IPR015943 GO:0005515
Trre12g00076 509 PRINTS G protein beta WD-40 repeat signature 166 180 IPR020472 -
Trre12g00076 509 PRINTS G protein beta WD-40 repeat signature 381 395 IPR020472 -
Trre12g00076 509 PRINTS G protein beta WD-40 repeat signature 123 137 IPR020472 -
Trre12g00076 509 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 146 181 - -
Trre12g00076 509 ProSiteProfiles Trp-Asp (WD) repeats profile. 104 145 IPR001680 GO:0005515
Trre12g00076 509 PANTHER LETHAL 2 DENTICLELESS PROTEIN RETINOIC ACID-REGULATED NUCLEAR MATRIX-ASSOCIATED PROTEIN 5 507 - -
Trre12g00076 509 ProSitePatterns Trp-Asp (WD) repeats signature. 123 137 IPR019775 -
Trre12g00076 509 Gene3D - 205 412 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00076 Trre-Chr12 616531 620105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00076 105 307 U-box Gene Family AT2G33340 24.554 5.43e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00076 K11790 - gmx:100775857 671.774