Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00074 ATGTCTGGCTTAGAAGAATTGAGAAAAAAGCTTGCACCATTATTTGATGCTGAAAAGGGTTTCTCATCAACTTCAACTTTAGACCCAAATGATTCTTATACATTTTCAGATGGTGGAACGGTGAATTTGTTGAGTAGATCATATGGAGTTTACAATATCAATGAACTTGGATTACAGAAATGCACCACATCATCATCATCATCAAGATCGAATGAAAACAACGACGATGGTGAAAAGACTTATAGATGTGGTTCTAATGAGATGAGAATTTTTGGAGCAATTGGTAGTGGTGCTAGTAGTATTGTTCAAAGAGCTATGCATATACCAACACATAGGGTTCTTGCATTAAGGAAGATCAATATCTTTGAGAAGGAGAAAAGGCAGCAGTTACTTACTGAGATTAGGACATTATGTGAAGCACCTTGTAATGAGGGTCTGGTGGAATTTCATGGTGCATTTTACACTCCAGACTCAAGACAGATAAGTATAGCTTTAGAGTACATGGACGGCGGATCACTTGCAGATATTTTGCGAACGCATAAAACGATACCCGAACCTATTTTATCATCCATGTTTCAGAAGCTCTTACATGGTTTAAGTTATCTTCATGGAGTTAGATATTTAGTTCATAGAGACATAAAGCCTGCTAATTTACTTGTAAATCTCAAGGGGGGGCCGAAAATTACCGATTTTGGTATTAGTGCTGGCTTAGAGAATTCAGGTGCAATGGGGCACATGATGCGTGAGGTGGTGACGAGAAGCTTTATTCTTGTTCTTGCTAAAGCTTTATTCTTGGTTTCTATAGTGTTGATTTTGAGCTCGTTGTTGCAAAATCTTGGTCTTGGTACTAATAACCTATCCGGCAATCTTCCGTCAAATATTTGTCAAGGGATTCCAAATGTTAGATATCTTTCTCTTGGTCTTAATGATCTTTCTGGAGACATGCCAAATGTTTGGCATCAATGTCAAGAGTTGGAAGAATTATATTTATCATTCAGTAGTTTCAATAGAGGACCCATACCACGTGGCATCCGAAACATGACCAAACTTCAAGCTTTAAATCTTAGTGGCAACAACTTGCAGGGTCCGATACCTGAGGAGATTGGATATCTTGATCAACTTGAGATTTTACGATTGTCAAACAATAACCTTAGTGGATCTATTCCTTCCAAAATCCTCAACATTTCATCACTGACATTCTTAACACTTTTGTATCTTGGAAACATCAGCTTCTCATATAATAGATTACGCGGAGAGATTCCTGATGGTGGACCTTTCAAAAATTTCACAGCTCAATCGTATTTACATAATGAAGCATTGTGTGGTAATCCCCGCCTACAAGTACCTCGGTGTGATAAACAAGTTAAGAAAATGTCAACAGTAAAGAAGCTACTATTACTCAAATGCATCCTCCCCATAACTGTGTCAGCCATTTTGGTTGTTGCATGCATCATACTTTTAAAACATAATAAAAGGAAAAAGGTTGAGAATACTCTTGAAAGGGATTCATCATCTTTAGGAGCTCAAAGAAGAATTTCGTATTATGAACTTGTGCAAACAACGAATGGATTCAGTGAGAAGTATGGATTAAATGGAATTATTTCTATCAAAGGAGACGTGTACAGCTATGGAATTATGTTAATGGAAATCTTCACAAGAAAAAGACCAACGGATGATATGTTTGTTGGGGAGCTAAGTTTGAAAACATGGATCAGTGGATCATTGCCTAATTCTATTCTAGAGGTCTTGGATTCTAATTTAGTCCAACAATATGAGGAACAAATTGATGACATATTGACTTACATGTCATCTATTTTTAATTTAGCTCTGAATTGTTGTGAATATTCACCTGAAGCAAGAATTAAAATGACAGATGTTATAACATCGTTACTCAAAATTAAGACTTTGGTTCTTGGTGGAAATATGGTCTAG 1932 0.3654 MSGLEELRKKLAPLFDAEKGFSSTSTLDPNDSYTFSDGGTVNLLSRSYGVYNINELGLQKCTTSSSSSRSNENNDDGEKTYRCGSNEMRIFGAIGSGASSIVQRAMHIPTHRVLALRKINIFEKEKRQQLLTEIRTLCEAPCNEGLVEFHGAFYTPDSRQISIALEYMDGGSLADILRTHKTIPEPILSSMFQKLLHGLSYLHGVRYLVHRDIKPANLLVNLKGGPKITDFGISAGLENSGAMGHMMREVVTRSFILVLAKALFLVSIVLILSSLLQNLGLGTNNLSGNLPSNICQGIPNVRYLSLGLNDLSGDMPNVWHQCQELEELYLSFSSFNRGPIPRGIRNMTKLQALNLSGNNLQGPIPEEIGYLDQLEILRLSNNNLSGSIPSKILNISSLTFLTLLYLGNISFSYNRLRGEIPDGGPFKNFTAQSYLHNEALCGNPRLQVPRCDKQVKKMSTVKKLLLLKCILPITVSAILVVACIILLKHNKRKKVENTLERDSSSLGAQRRISYYELVQTTNGFSEKYGLNGIISIKGDVYSYGIMLMEIFTRKRPTDDMFVGELSLKTWISGSLPNSILEVLDSNLVQQYEEQIDDILTYMSSIFNLALNCCEYSPEARIKMTDVITSLLKIKTLVLGGNMV 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00074 643 SUPERFAMILY L domain-like 270 444 - -
Trre12g00074 643 Gene3D Transferase(Phosphotransferase) domain 1 170 257 - -
Trre12g00074 643 FunFam mitogen-activated protein kinase kinase 3 56 169 - -
Trre12g00074 643 Pfam Protein kinase domain 92 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g00074 643 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 528 631 - -
Trre12g00074 643 Gene3D Phosphorylase Kinase; domain 1 56 169 - -
Trre12g00074 643 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 319 420 - -
Trre12g00074 643 SUPERFAMILY Protein kinase-like (PK-like) 85 628 IPR011009 -
Trre12g00074 643 SMART serkin_6 88 506 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g00074 643 Gene3D Transferase(Phosphotransferase) domain 1 489 635 - -
Trre12g00074 643 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Trre12g00074 643 Gene3D Ribonuclease Inhibitor 262 459 IPR032675 -
Trre12g00074 643 ProSiteProfiles Protein kinase domain profile. 88 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00074 Trre-Chr12 602701 611495 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00074 36 252 MAP Kinase Kinase Gene Family AT5G40440 76.959 7.29e-113 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Trre12g00074 Pkinase 3.9e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00074 K20607 - gmx:100784935 425.246