Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00072 ATGTCTGGCTTAGAGGAATTGAGAAAAAAGCTTGCACCATTGTTTGATGCTGAAAAGGGTTTTTCATCAACTTCAACATTAGACCCAAACGATTCTTATACTTTTTCAGATGGTGGAACGGTGAATTTGTTGAGTAGATCCTATGGAGTTTACAATATCAATGAACTCGGGTTACAGAAATGCAGCACATCGTTAAGATCGAATGAAAACAGTGACGATGGTGAAAAGACGTATAGATGTGGTTCTCATGAGATGAGAATTTTTGGAGCAATTGGTAGTGGTGCTAGCAGTGTTGTTCAAAGAGCTATGCATATACCAACTCATAGGGTTCTTGCATTAAAGAAGATCAATATCTTTGAGAAGGAGAAAAGGCAGCAACTGCTTACTGAGATAAGGACGTTATGTGAAGCACCTTGTAATGAGGGTCTTGTGGAATTTCATGGTGCATTTTACACTCCAGACTCAGGACAGATAAGCATAGCTTTAGAGTACATGGATGGAGGATCACTTGCAGATATTTTGCGAACGCATAGAACGATACCCGAACCTATTTTATCATCCATGTTTCAGAAGCTCTTACATGGTCTAAGTTATCTTCATGGAGTCAGATATTTAGTTCATAGAGACATAAAGCCTGCTAATTTACTTGTAAATCTCAAGGGGGAGCCGAAAATTACCGATTTTGGTATTAGTGCTGGCTTAGAGAATTCAGTTGCAATGTGTGCTACATTTGTTGGAACTGTTACGTACATGTCACCCGAGCGAATTCGAAATGAAAGCTATTCTTATCCGGCTGATATTTGGAGCCTCGGTCTTGCGCTTCTCGAGTGTGGTACAGGAGAATTCCCATATACAGCTAATGAAGGTCCTGTCAATCTTATGTTGCAGATCCTTGATGATCCATCACCATCTCCATCAAAAGAGAAGTTTTCACCTGAATTCTGCTCCTTTGTCGATGCATGCTTAATGAAGGATCCAGATAACAGACCAACGGCAGAGCAGCTTCTTTCGCACTCCTTCATTATGAAGTACGAGACTGCCAAGGTAGATTTACCAGGTTTTGTTCGCAGTGTTTTTGATCCTACGCAAAGAATGAAGGACTTGGCAGATATGTTGACTATACATTATTACTTACTAATTGATGGACCTGATAATTTGTGGCAACATACAAAGAACTTATATAACGAAAACTCAATTTTCAGCTTCTCGGGGAAACAACATGTTGGTCCTAGCAATATCTTCACGACTCTATCAAGTATTCGAACTACATTAATTGGCGATTGGCCACCGGAAAAGTTGGTACATGTAGTTGAGAAGCTTCAATGCCGAGCGCACGGTGAAGATGGAGTTGCAATAAGAGTCTCAGGATCATTTATAGTTGGTAATCAGTTTCTCATATGTGGAGATGGCATTCAAGTAGAGGGATTACCAAACTTTAAGGATCTTGGAATTGATATTTCTAGTAAGAGAATGGGTATATTTCATGAACAATTCATAGTGGAACCAACTAGTAATATTGGATGTTACACTATAGTTAAACAAGAATTGTACATTAACAAATAA 1563 0.3909 MSGLEELRKKLAPLFDAEKGFSSTSTLDPNDSYTFSDGGTVNLLSRSYGVYNINELGLQKCSTSLRSNENSDDGEKTYRCGSHEMRIFGAIGSGASSVVQRAMHIPTHRVLALKKINIFEKEKRQQLLTEIRTLCEAPCNEGLVEFHGAFYTPDSGQISIALEYMDGGSLADILRTHRTIPEPILSSMFQKLLHGLSYLHGVRYLVHRDIKPANLLVNLKGEPKITDFGISAGLENSVAMCATFVGTVTYMSPERIRNESYSYPADIWSLGLALLECGTGEFPYTANEGPVNLMLQILDDPSPSPSKEKFSPEFCSFVDACLMKDPDNRPTAEQLLSHSFIMKYETAKVDLPGFVRSVFDPTQRMKDLADMLTIHYYLLIDGPDNLWQHTKNLYNENSIFSFSGKQHVGPSNIFTTLSSIRTTLIGDWPPEKLVHVVEKLQCRAHGEDGVAIRVSGSFIVGNQFLICGDGIQVEGLPNFKDLGIDISSKRMGIFHEQFIVEPTSNIGCYTIVKQELYINK 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00072 520 Gene3D Phosphorylase Kinase; domain 1 79 160 - -
Trre12g00072 520 ProSiteProfiles Protein kinase domain profile. 85 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g00072 520 SUPERFAMILY NTF2-like 366 463 IPR032710 -
Trre12g00072 520 Gene3D - 360 518 - -
Trre12g00072 520 CDD PKc_MAPKK_plant_like 86 345 - -
Trre12g00072 520 FunFam mitogen-activated protein kinase kinase 3 167 363 - -
Trre12g00072 520 Pfam Protein kinase domain 89 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g00072 520 SMART serkin_6 85 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g00072 520 SUPERFAMILY Protein kinase-like (PK-like) 87 378 IPR011009 -
Trre12g00072 520 FunFam Mitogen-activated protein kinase kinase 3 365 519 - -
Trre12g00072 520 Gene3D Transferase(Phosphotransferase) domain 1 161 353 - -
Trre12g00072 520 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Trre12g00072 520 ProSiteProfiles Nuclear transport factor 2 domain profile. 368 518 IPR018222 -
Trre12g00072 520 ProSitePatterns Protein kinases ATP-binding region signature. 91 114 IPR017441 GO:0005524
Trre12g00072 520 FunFam mitogen-activated protein kinase kinase 3 56 166 - -
Trre12g00072 520 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 26 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00072 Trre-Chr12 589396 594326 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00072 35 519 MAP Kinase Kinase Gene Family AT5G40440 77.113 0.0 793
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Trre12g00072 Pkinase 1.5e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00072 K20607 - gmx:100784935 955.281