Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00071 ATGTCACCCGAGCGAATTCGAAATGAAAGCTATTCTTATCCGGCTGATATTTGGAGTCTAGATTTTGCGCTTCTCGAGTGTGGTACAAGAGAATTCCCATATACAACTAATGAAGGTCCTGTCAATCTTATGTTGCAGATCCTTGATGATCCATCACTGTCTCCATCAAAAGAGAAGTTTTCACCTGAATTCTACTCCTTTGTCGATGCATGCTTACTGAAAGATCCAGATAACAGACCAACAGCAGAGTAG 252 0.4127 MSPERIRNESYSYPADIWSLDFALLECGTREFPYTTNEGPVNLMLQILDDPSLSPSKEKFSPEFYSFVDACLLKDPDNRPTAE 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00071 83 Gene3D Transferase(Phosphotransferase) domain 1 1 83 - -
Trre12g00071 83 ProSiteProfiles Protein kinase domain profile. 1 83 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g00071 83 SUPERFAMILY Protein kinase-like (PK-like) 1 83 IPR011009 -
Trre12g00071 83 Pfam Protein kinase domain 1 83 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g00071 83 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 1 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00071 Trre-Chr12 584300 584690 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00071 1 83 MAP Kinase Kinase Gene Family AT5G40440 79.518 7.97e-43 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Trre12g00071 Pkinase 1.5e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00071 K20607 - pvu:PHAVU_007G112700g 155.606