Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00069 ATGTTGGGAGGAGGGCCTAAAAATCCTCAAGATCTAAGCCTAGCTAAGGGTGGAAGATCATCATGCCTTTGGTTTTTCAAATTTTTGGAAGTGTTACCTCATCAAAGGGAAGATACAGTGAATTCTTTAGCTTATGAAGCTGAAGCAAGGATTAAAGATCCAGTTTATGGTTGTGTTGGAGCTATTTCAGGGCTACAAAAACAACTCTTTGGGCTTCAAAAGGAACTTGATGCTACAAATGCTGATTTAATTCAATTTACTCTTCAAGGTTCTTCTTCTCTTGGACTTGGACATGTTGATCACTCTCATGATTTTTATAATTACCCTTCTAATTTTGAGCAATGA 345 0.371 MLGGGPKNPQDLSLAKGGRSSCLWFFKFLEVLPHQREDTVNSLAYEAEARIKDPVYGCVGAISGLQKQLFGLQKELDATNADLIQFTLQGSSSLGLGHVDHSHDFYNYPSNFEQ 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00069 114 Pfam Lateral organ boundaries (LOB) domain 30 79 IPR004883 -
Trre12g00069 114 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 30 86 - -
Trre12g00069 114 ProSiteProfiles LOB domain profile. 1 83 IPR004883 -
Trre12g00069 114 Coils Coil 62 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00069 Trre-Chr12 566854 570857 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00069 30 99 AS2 family AT5G63090 68.571 1.25e-28 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre12g00069 LOB 1.9e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00069 - - mtr:11421075 141.354