Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00068 ATGATGGCCTCTAGCTACTCAAGTTCTCCATGTGCTGCTTGCAAGTTTCTAAGAAGAAAATGTAATCAAGATTGTATTTTTGCACCTTATTTTCCATCAGAAGAGCCTCAAAAATTTGTTAATGTTCACAAAATATTTGGTGCAAGCAATGTTAGCAAATTTCTAAATGAAGTTTTACCTCATCAAAGGGAAGATACAGTGAATTCTTTAGCTTATGAAGCTGAAGCAAGGATTAAAGATCCAGTTTATGGTTGTGTTGGAGCTATTTCAGTGCTACAAAAACAACTTATTAGGCTTCAAAAGGAACTTGATGCTACAAATGCTGATTTGATTCGAATTACTCATCAAGGTTCAATTTCTCTTGGACATGTTGATCACTCTCATGGTTTTCTTAATTATCCTTCTAATTTGAGCAATGATATGTGA 426 0.3404 MMASSYSSSPCAACKFLRRKCNQDCIFAPYFPSEEPQKFVNVHKIFGASNVSKFLNEVLPHQREDTVNSLAYEAEARIKDPVYGCVGAISVLQKQLIRLQKELDATNADLIRITHQGSISLGHVDHSHGFLNYPSNLSNDM 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00068 141 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 115 - -
Trre12g00068 141 Coils Coil 89 109 - -
Trre12g00068 141 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Trre12g00068 141 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00068 Trre-Chr12 553346 553771 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00068 4 112 AS2 family AT3G27650 79.817 1.49e-65 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre12g00068 LOB 6.1e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00068 - - mtr:11423777 243.817