LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre12g00062	ATGAATACGACGTCGTTTATGGACAAACAGATAATGGATCTGAATCTACCTCATCATCATGAATCTTCCCCTTCTTCTACTTCTACTCCCAACAACGATTTCATCGACCTCATCAAGCTTCGTCATCACGAACAACAACAACAACAACAACACGAAGTAGAAGAAGAAGAAGAAGACGATTCGTCGATTCATCACAACAATGGAATCAAAACTGAAGATATCGTTCCTAGCTACGATTTTCAACCGATTCGTTCACTTCCTGATTTATCGGTTTCAAAACCTTGGAACTCTGATTCCAACTCCAAAAAATACAGTTCTCTGGATTCTTTTGAACCTGCAAAGGTGACTGTAGAAAAGGACCAGAGCGCTGTTGATGCTTCAATTTTGTTAGAGATTGATCGAACAATGAAGAAACATATGGACAATTTGCATCATGTTCTGGAAGGTGTCAGTGCACGGTTAACACAAGTAGAAACCAGAACTCACAATCTTGAGAGTTCTATGGATGATTTGAAGGTAACTGTTGGAAATAATCATGGAATCACTGATGGGAAATTGAGGCTGCTGGAGAATATTCTTCGCGAGGTGCATACAGGGGTGCATGATATCAAGGACAAGCAAGATATAGTGCAAGCTCAGCTGCAACTGGCAAAACTACAAGTGTCCAAGACAGATCAACAATCTGAAACTCAAACTAGTGTCATACCAGATCCTGTGCAGCAAACTTCATCTGTATCTGCATCTGCTCCCCTGCAAACTCAACAATATTTTCCTTCGCCTGTTAATCTTCCACAATCAATTCCTGTGGTTTCTCCCCCTAATGCACCTCCTCAACAGGGTTTGCCACCTCCAGGTCAACTTCCAAATCAATTCTCTCAGATCCCAAACCCAACTGTTCCTCAGAGAGATCCATACTTACCACCACCCATTCAATCTCAGGAAATCCCAAATCAGCAATACCAACTGCCTTTAACTCAGCAGTCACATCCTCAACCAGGGGCACCTCCGCATCAACAATATCAGCAGACCCCTCATCCTCAGTACTCTCAGCCATCACCTCATCTACCTCAACAACAGCCACCACATTCATCCGTATCTCATCTACCTCAACAACAGCCACCACATTCATCCGGACCTCATCTACCTCAACAACAGCCACCACATTCATCCGGAAATCCACCTCAAATGCAACCTTCACTAGGTCACCATCTAGAGGAGCCACCTTATGTTCCTTCTCAGAATTATCCTCCCAATCTCCGCCAGCCACCATCTCAGTCACCCAGTGGACCTCCTCCACCTTCCCAACAGTATTATGGGACACCGCCCCAAGGATATGAACCAGCATCGAGTAGATCTGGTTCAAATTATTCTTCTGGATATGGTACATTATCTGGGCCTGCTGAGCCATATCGATATGGCGGGCCACCTCAGTATGGTAGTAAACAACCACAACTACCCACTGCTTCGGTGGCTTCCAGCGGTGGAAGTGGTTACCCACAGCTCCCTACTGCCCGCCCACTCCCACAAGCAATACCTACTGCATCTGCAGTAAGTGGTGGTTCTGGTTCAGGTTCTCCTGGATCTGGTTACAGGGTTGCTGTCGATGATGTAGTTGATAAAGTTGCTACTATGGGATTCCCTAGAGACCATGTGAGGGCAACAGTTCGGAAGCTGACAGAGAATGGTCAATCAGTTGATCTAAATACAGTGCTGGATAAGCTTATGAATGAAGGTGGTGAAATGCAGCAACAAAGAGGTTGGTTTGGTAGGTAA	1773	0.4518	MNTTSFMDKQIMDLNLPHHHESSPSSTSTPNNDFIDLIKLRHHEQQQQQQHEVEEEEEDDSSIHHNNGIKTEDIVPSYDFQPIRSLPDLSVSKPWNSDSNSKKYSSLDSFEPAKVTVEKDQSAVDASILLEIDRTMKKHMDNLHHVLEGVSARLTQVETRTHNLESSMDDLKVTVGNNHGITDGKLRLLENILREVHTGVHDIKDKQDIVQAQLQLAKLQVSKTDQQSETQTSVIPDPVQQTSSVSASAPLQTQQYFPSPVNLPQSIPVVSPPNAPPQQGLPPPGQLPNQFSQIPNPTVPQRDPYLPPPIQSQEIPNQQYQLPLTQQSHPQPGAPPHQQYQQTPHPQYSQPSPHLPQQQPPHSSVSHLPQQQPPHSSGPHLPQQQPPHSSGNPPQMQPSLGHHLEEPPYVPSQNYPPNLRQPPSQSPSGPPPPSQQYYGTPPQGYEPASSRSGSNYSSGYGTLSGPAEPYRYGGPPQYGSKQPQLPTASVASSGGSGYPQLPTARPLPQAIPTASAVSGGSGSGSPGSGYRVAVDDVVDKVATMGFPRDHVRATVRKLTENGQSVDLNTVLDKLMNEGGEMQQQRGWFGR	590

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre12g00062	590	MobiDBLite	consensus disorder prediction	480	499	-	-
	Trre12g00062	590	MobiDBLite	consensus disorder prediction	221	264	-	-
	Trre12g00062	590	MobiDBLite	consensus disorder prediction	410	438	-	-
	Trre12g00062	590	MobiDBLite	consensus disorder prediction	221	313	-	-
	Trre12g00062	590	MobiDBLite	consensus disorder prediction	439	462	-	-
	Trre12g00062	590	PRINTS	Proline rich extensin signature	422	434	-	-
	Trre12g00062	590	PRINTS	Proline rich extensin signature	382	407	-	-
	Trre12g00062	590	PRINTS	Proline rich extensin signature	343	360	-	-
	Trre12g00062	590	PRINTS	Proline rich extensin signature	297	309	-	-
	Trre12g00062	590	PRINTS	Proline rich extensin signature	252	264	-	-
	Trre12g00062	590	PRINTS	Proline rich extensin signature	268	284	-	-
	Trre12g00062	590	PANTHER	RECEPTOR-LIKE KINASE, PUTATIVE (DUF1421)-RELATED	1	397	-	-
	Trre12g00062	590	MobiDBLite	consensus disorder prediction	375	393	-	-
	Trre12g00062	590	MobiDBLite	consensus disorder prediction	359	374	-	-
	Trre12g00062	590	MobiDBLite	consensus disorder prediction	325	528	-	-
	Trre12g00062	590	Pfam	UBA-like domain (DUF1421)	534	577	IPR010820	-
	Trre12g00062	590	MobiDBLite	consensus disorder prediction	265	290	-	-
	Trre12g00062	590	MobiDBLite	consensus disorder prediction	325	348	-	-
	Trre12g00062	590	MobiDBLite	consensus disorder prediction	43	76	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre12g00062	Trre-Chr12	484783	488297	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre12g00062	35	306	Trihelix Transcription Factor Family	AT5G14540	42.765	8.26e-56	196

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre12g00062	-		-	gmx:100777464	629.402