Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00052 ATGGAATCACCTGGAAAAGACCATATGATTGGAAGCGGAGAACAAAACGACGTTGGTAGAGTCTTTAATCACAGAGATGAACACGACCATGAACAACAACACCATAACTCTCAACCTCTCACCGGTGATGGTGCAAGTCCTGGAAAGATATTTATTGGTGGTTTAGCGAGAGAAACAACGATTGCACAATTTATCAAACACTTTGGTAAATATGGTGAGATTACTGATTCTGTAATCATGAAGGACAGGAAAACTGGGCAGCCTCGTGGATTTGGGTTTATTACTTATGCTGATCCGTCGGTGGTTGATAAAGTCATTGAGGATTCTCATATCATCAATGCCAAACAAGTTGAGATTAAGCGGACTATACCAAGGGGAGCTGTTGGCTCTAAGGATTTTAGGACAAAGAAAATATTTGTAGGTGGTATCCCTTCAAATGTGACTGAAGATGAATTTAGAGACTTTTTCACACGCTATGGAGAAGTCAAAGATCACCAAATAATGCGGGACCACGCTACCAATAGATCTCGTGGCTTTGGATTTGTTACCTTTGACACTGAGGAAGCTGTTGACGATCTTCTATCTATGGGGAACAAGATTGAGTTTGCTGGCACCCAGGTGGAAATCAAGAAGGCTGAACCAAAGAAGGCAAACCCACCACCTCCATCATCTAAGCGCTACAATGATTCAAGGTCTTCATACGGCAGTGGTGGGTATGGGGATTCTTATGATGGATTTGGCGGTAGCTTTGGTGTTGGTAGTGCTTACAGCAGGTCAGGCAGTGTCTATGGTGGTAGGGGAGGTCCTTATGGTGGCTATGGAAGTGAATTTGCTGGATATGGGGGATATGCTGGAGCTATGGGAGGACCCTACAGAGGAGATCCTTCCCTAGGGTATGCAGGTCGTTATGGTGGTAGCTTTAGCAGAGGCTATGATCTTAGTGGTTATGGGGGACCTGGTGAGAGTTACGGAGCATATGGTGGCGCTGGTGCAGGAGCTGCTGCTGGAGGCGGTTCTTCCGGCGCTGGTGCATATCAAAGCGGGTACGACTCTAGCCTTGGAGGTGGTTATGGAGGAGGAGCTAGTGGAGGTTCCTTCTATGGGAGCCGAGGAGGTTATGGTGCCGGCCGATATCACCCGTATGGAAGATAG 1152 0.4679 MESPGKDHMIGSGEQNDVGRVFNHRDEHDHEQQHHNSQPLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIEDSHIINAKQVEIKRTIPRGAVGSKDFRTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDHQIMRDHATNRSRGFGFVTFDTEEAVDDLLSMGNKIEFAGTQVEIKKAEPKKANPPPPSSKRYNDSRSSYGSGGYGDSYDGFGGSFGVGSAYSRSGSVYGGRGGPYGGYGSEFAGYGGYAGAMGGPYRGDPSLGYAGRYGGSFSRGYDLSGYGGPGESYGAYGGAGAGAAAGGGSSGAGAYQSGYDSSLGGGYGGGASGGSFYGSRGGYGAGRYHPYGR 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00052 383 Gene3D - 136 219 IPR012677 -
Trre12g00052 383 FunFam Heterogeneous nuclear ribonucleoprotein 1 129 250 - -
Trre12g00052 383 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 138 207 IPR000504 GO:0003723
Trre12g00052 383 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 50 111 IPR000504 GO:0003723
Trre12g00052 383 MobiDBLite consensus disorder prediction 210 234 - -
Trre12g00052 383 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 48 124 IPR000504 GO:0003723
Trre12g00052 383 SUPERFAMILY RNA-binding domain, RBD 39 126 IPR035979 GO:0003676
Trre12g00052 383 SMART rrm1_1 49 120 IPR000504 GO:0003723
Trre12g00052 383 SMART rrm1_1 137 210 IPR000504 GO:0003723
Trre12g00052 383 MobiDBLite consensus disorder prediction 27 46 - -
Trre12g00052 383 FunFam Heterogeneous nuclear ribonucleoprotein 1 47 128 - -
Trre12g00052 383 Gene3D - 14 131 IPR012677 -
Trre12g00052 383 SUPERFAMILY RNA-binding domain, RBD 133 241 IPR035979 GO:0003676
Trre12g00052 383 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 20 383 - -
Trre12g00052 383 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 136 214 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00052 Trre-Chr12 399728 402706 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00052 48 204 Eukaryotic Initiation Factors Gene Family AT1G71770 26.590 2.04e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00052 K12741 - gmx:100793209 454.136