Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00050 ATGGAGAAAGAGATTGTGGAAAACCTTTGGAATGGTGATAGTGAAGCTCAAATTCAAGCAGCAATGGAACTTAGTAGATTGTGCAATAAGCAAAAGCTCAAATTGGCAGAAAATGGTGTTATGGTTCCTCTTGTTTCCATGCTTCATTCCGAAAACTATGAAGTCATAGAAGCTTCTCTTTGTGCTTTTCTCAGCCTCTCCTTTGGCAGTGATAGAAACAAGATTCGTATCGTCAGGTACGGAGTTTTGCCAATTTTGTTGAACCTCCTCCATTGTGAAAGCCAGACAGTGATACAATTGTCATTAGCAGCCATGTTAACACTTTCTTCTTGCAAGGCAAATAAGATAGCAATAGCTTCATCTGGTGCAGTTCAAATTTTGGTTACATATATCAATAGTAGCAACAACATTCACACTCAGTCTCAACTAGATGCTATAGCTACTCTCCATAACCTTACAACCTGCCAAGAGATTATTCCATTAATTGTATCTTCTGGTGTTATATTCTCCTTGCTTGAACTTATCCACGGCTCGGTAAAATCATCTTTGTTGGCTGAGAAAGCAATAGGGTTGCTAGAAAATATTGTTTCTTCATCAGAGAGTGCACTTTGTGAGGCTGCTAGTACCAGAGGAGCAATTAGGATATTGGTTGAGACTATTGAAGATGGATCTTCACTAGGAAAAGAGCATGCAGTTGGTATACTTCTACTTATATGTCAAAGCTGTAGAGAAAAATATAGGGTATTGATTTTGACAGACGGAGTGATGCCAGGATTGCTTCAGTTAAGCGTTGATGGAACGTGGAGAGCTAAATCCGTGGCTGGAGAATTGTTGTTGCTTCTAAGAGACTGCTCTAGTTATAACTCGAGGCGAAAACAAATTAATCATAAGCTTATAGAACAGTTGATGGAAGAAATTGATGCAGAAGGTGACAAATTGGCAGATACTACTTTGAGATTGGTAGAGGAGATGATTGCAAAGCTCAATACATGA 993 0.3897 MEKEIVENLWNGDSEAQIQAAMELSRLCNKQKLKLAENGVMVPLVSMLHSENYEVIEASLCAFLSLSFGSDRNKIRIVRYGVLPILLNLLHCESQTVIQLSLAAMLTLSSCKANKIAIASSGAVQILVTYINSSNNIHTQSQLDAIATLHNLTTCQEIIPLIVSSGVIFSLLELIHGSVKSSLLAEKAIGLLENIVSSSESALCEAASTRGAIRILVETIEDGSSLGKEHAVGILLLICQSCREKYRVLILTDGVMPGLLQLSVDGTWRAKSVAGELLLLLRDCSSYNSRRKQINHKLIEQLMEEIDAEGDKLADTTLRLVEEMIAKLNT 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00050 330 FunFam U-box domain-containing protein 4 3 199 - -
Trre12g00050 330 Pfam Armadillo/beta-catenin-like repeat 70 105 IPR000225 GO:0005515
Trre12g00050 330 Gene3D - 138 328 IPR011989 -
Trre12g00050 330 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 81 123 IPR000225 GO:0005515
Trre12g00050 330 SMART arm_5 28 68 IPR000225 GO:0005515
Trre12g00050 330 SMART arm_5 111 154 IPR000225 GO:0005515
Trre12g00050 330 SMART arm_5 70 110 IPR000225 GO:0005515
Trre12g00050 330 SMART arm_5 155 197 IPR000225 GO:0005515
Trre12g00050 330 PANTHER U BOX DOMAIN-CONTAINING 4 286 - -
Trre12g00050 330 SUPERFAMILY ARM repeat 4 312 IPR016024 -
Trre12g00050 330 Coils Coil 299 319 - -
Trre12g00050 330 FunFam U-box domain-containing protein 4 203 319 - -
Trre12g00050 330 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 122 167 IPR000225 GO:0005515
Trre12g00050 330 Gene3D - 3 134 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00050 Trre-Chr12 389692 391198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00050 4 283 U-box Gene Family AT3G54790 30.986 1.16e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00050 - - gmx:100778534 496.893