Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00045 ATGGAGTCACGTTCGCGTATCAATGCAGTTGAATCGATATCAGAGGTTCAGAATTCAGTTTCTGGAGTACCGATACGCCACAGCCTTCCTTTAACATCAGGGATTCCCCGTCCTTCGCGGCCTCCCTTATATAGAAATAACGGCGCAGCTTCTTCTTCTTCCACATGCTTTTTGGAACAAAGACATCATCATAATTATGGAACAAAGAAGGTTCACCATCTAAACAGCTTTGTAGTTAATCAGAAGCATTCATATCAAGACCGAAACAATGAAGGATTGCCAGCAAAATTGTGCAGCAAGCAACTGTTTGCTGATGATCCAAAGAATTGTGGCTCAAGTTTCGCAGTATTAGAATCCAACAATTGTGTCTTAGTTCCATCAAAACGAGGCGTTGTTAATCAACCAAAGAATTACCATTGTCAGTCAGAGATTAGTTTTTGTCCTAGTCCTCAGAATAGTTTCTATTCAGCCACTCTATATTCGGAAGCGAAACAAAGTTTCAGCAATACTGAAGTCAGTGAGTGTGTTAGTGTTGATACTAAGTCGTACGAAAGCGGAGAAGTTTCGAATTCATGTGGTTTTACTGATAGTAGGAAAACCAGCATATATAGAGCGAGTACCGGAAGTGATGTTAGCGACGAAAGCAACACGAGTAGTTTGAGCAGTGCTTTGTATAGACCTCATAAAGCAAATGATATAAGATGGGAAGCGATTCAAGCTATCCGAGCTCGTGATGGGATGTTGGAAATGAGGCATTTTAGGTTGTTGAAGAGATTGGGAAAAGGAGATATAGGAAGTGTATATCTAGCAGAACTTAGTGGCACAAGAACTTCTTTTGCTATGAAACTCATGAACAAAACTGAGCTTGCAAGTCGCAAGAAGCATCTGAGGGCTCAGACGGAAAGAGAGATATTGCAGTCTTTAGATCATCCTTTTTTACCAACATTATATACACACTTTGAGACTGAGACACTCTCTTGCTTGGTAATGGAGTTTTGTCCTGGTGGTGACCTTCATGCTATCATGCAAAGACAACCTGGGAAGTATTTCTCGGAGCATGCTGTCAGGTTTTATGTGGCAGAAGTTCTCCTTGCTTTGGAGTACTTACATATGCTTGGAATCATCTACAGAGACCTTAAACCTGAGAATGTGTTGGTGAGAGAAGACGGTCATATAATGCTTTCCGATTTCGATCTCTCTCTAAGATGCACTGTCAGTCCAACTCTTGTGAAGTCGTCAAACCCGATCGCCGAAAGGAAAACCTCAGGATATTGCATTCAGCCAACATGTGCAATGCAGCCAGACTGCATCCAATCTGCATGCTTTTCACCGCGGTTCCTATCTGGAAAATCCAAGAAAGAGAAAAAGGTCAGATCAAAATATGACATGCATCACCAAGTGACACCTCTGCCAGAGCTAATCGCTGAGCCAACAAGTGCGCGATCGATGTCCTTTGTAGGCACACACGAGTACTTGGCACCTGAAATTATTAAAGGAGAAGGACACGGCAGTGCTGTGGATTGGTGGACGTTCGGGATATTCTTATACGAACTCTTGTTTGGTCGAACACCATTCAGAGGTTCAGCAAACCGAGCGACACTGTTTAATGTTGTTGGACAGCCTTTAAGGTTTCCGGAATCTCCTACCGTCAGCTTTGCTGCAAGGGATTTGATCAGAGGTTTACTTGTGAAAGAGCCTCAACACCGTCTTGCCTATAGACGTGGAGCTACCGAAATCAAACAGCATCCGTTCTTTCACAATGTGAACTGGGCACTGATCCGTTGCGCTAATCCGCCAGAGGTACCGAGACAAACCATGATGATGAATCCAACCTCAGCTGAAAATGAAGTTTCTGGTAATTATTTAGATATTGATTTCTTTTGA 1884 0.4278 MESRSRINAVESISEVQNSVSGVPIRHSLPLTSGIPRPSRPPLYRNNGAASSSSTCFLEQRHHHNYGTKKVHHLNSFVVNQKHSYQDRNNEGLPAKLCSKQLFADDPKNCGSSFAVLESNNCVLVPSKRGVVNQPKNYHCQSEISFCPSPQNSFYSATLYSEAKQSFSNTEVSECVSVDTKSYESGEVSNSCGFTDSRKTSIYRASTGSDVSDESNTSSLSSALYRPHKANDIRWEAIQAIRARDGMLEMRHFRLLKRLGKGDIGSVYLAELSGTRTSFAMKLMNKTELASRKKHLRAQTEREILQSLDHPFLPTLYTHFETETLSCLVMEFCPGGDLHAIMQRQPGKYFSEHAVRFYVAEVLLALEYLHMLGIIYRDLKPENVLVREDGHIMLSDFDLSLRCTVSPTLVKSSNPIAERKTSGYCIQPTCAMQPDCIQSACFSPRFLSGKSKKEKKVRSKYDMHHQVTPLPELIAEPTSARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFRGSANRATLFNVVGQPLRFPESPTVSFAARDLIRGLLVKEPQHRLAYRRGATEIKQHPFFHNVNWALIRCANPPEVPRQTMMMNPTSAENEVSGNYLDIDFF 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00045 627 MobiDBLite consensus disorder prediction 26 48 - -
Trre12g00045 627 Gene3D Transferase(Phosphotransferase) domain 1 480 603 - -
Trre12g00045 627 FunFam Serine/threonine-protein kinase D6PK-like 251 336 - -
Trre12g00045 627 Gene3D Transferase(Phosphotransferase) domain 1 337 408 - -
Trre12g00045 627 SUPERFAMILY Protein kinase-like (PK-like) 233 608 IPR011009 -
Trre12g00045 627 Gene3D Phosphorylase Kinase; domain 1 251 336 - -
Trre12g00045 627 FunFam serine/threonine-protein kinase D6PK-like 480 603 - -
Trre12g00045 627 CDD STKc_phototropin_like 251 603 - -
Trre12g00045 627 Pfam Protein kinase domain 254 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g00045 627 Pfam Protein kinase domain 482 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g00045 627 ProSiteProfiles Protein kinase domain profile. 253 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g00045 627 PANTHER FLIPPASE KINASE 1-RELATED 101 609 - -
Trre12g00045 627 SMART serkin_6 253 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g00045 627 FunFam serine/threonine-protein kinase D6PK-like 337 404 - -
Trre12g00045 627 ProSitePatterns Serine/Threonine protein kinases active-site signature. 374 386 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00045 Trre-Chr12 330828 333253 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00045 160 627 AGC Kinase Gene Family AT5G47750 67.879 0.0 666
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Trre12g00045 Pkinase 2.8e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00045 K08286 - gmx:100810909 959.903