Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00042 ATGACCATGCTTAGCTATACACCAATAATTTTTGAACTCTTCTTTTACATATGCATCGTCTTCCAAATTCATCGTTGGAGACGTTGCAAATACCCAATTCAAATAGATTATCCAATTGTTGGCATGGTGGTACCATTCCTTTGGAACTTGAGGCATATTCATGATTACATAACTCAGTCATTGAAAAAACAACATAGGAACACATGTGAGTTCATGGGACCTTGGTTTACCAACCAAAACTATTTGGTCACTAGTGATCCTATCAATGTTCATCACATGTTGAGCAAGTGTTTTGATAATTATGTTAAGGGTCATGAATATCATGAGATTTTTGAAGCCTTTGGAGATGGAATATTCAACGCCGATTCGGAGACATGGAAATACAATAGGTCACTTTTTCACTCCGTTTTCAAACAAAGAGATTTTGAATTGTTTGAAGAGAAAATTATTCGAAACAAGTTGGAGAGAAGCTTGATTCCTATGTTGGATCATGTTCAACAAAAAGGGTCGGTGGTGGATCTACAAGATGTCTTCAATCGTTTCACATTCGATAACATTTGTTCTGTGGTTCTCGGATGTGATCCAAATTGTCTTTCAGTTGATTTACCCGATGTCGTGTGTGAGAAGGCTTTTAACGAAATTGAAGAGGGCATATTCTATAGACATAAAGTGCCTAGTGCTTTGTGGAAGTTGCAAAAATGGCTTCAAATTGGTGAAGAGAAAAATATGACCAATGCATGCAAAACCTTTGATGAATTTATATATGCAAATATAGCATCAAAGAGAGAAGAGCTAAACAAGTGTAACAAAAATGATGAAATTGTTGATTTGCTAACAATGCTTATGAAAAAAGATAAGGGATCACAAGTAGTAGTACATGATGATAAGTTTCTAAGGGATGCTGCATTCAATCTCTTTGTAGCTGGTAGAGATACTATAACTTCAGCTCTTACATTTTTCTTTTATCTTGTAGCTACACACCCTTTAGTTGAAGCCAAGATTCTTGAAGAGATTAAAGAAATTTTTGGGAGCATTAATAATATTGAAAAGAAATTAGGGGTTGATGATTTGAAAAAGTTAGTTTATCTTCAAGGTGCTATATGTGAGGCTCTAAGGCTTTTTCCTCCAATACCCTTTGAGAGAAAGCAAGCAATTAAAGGTGATATACTTCCAAGTGGACACATTGTTAAACCTAATACAAACATACTATTTTTTGTGTATTCAATGGGGAGATTGGAAGAGATATGGGGAAAAGATTGTTTGGAGTTCAAGCCAGAGAGATGGATATCGGAGAGAGGAGGGATTGTTCATGTACCATCTTACAAGTTCAATAGTTATAATGCTGGACCTAGAACTTGTTTGGGAAAGGACTTGTCCATGATTCAAATTAAGATGACAGCAATTGCTATTTTGAGCAAATATTGTGTCCAAGTTGAGGATGGTCATGTTCCTTTCCTAAGCCATTCAATTGTACTTCTTATGAAGAATGGTTTCAAGGTTAGGATAACAAAAAGAGAAATTTGA 1524 0.3537 MTMLSYTPIIFELFFYICIVFQIHRWRRCKYPIQIDYPIVGMVVPFLWNLRHIHDYITQSLKKQHRNTCEFMGPWFTNQNYLVTSDPINVHHMLSKCFDNYVKGHEYHEIFEAFGDGIFNADSETWKYNRSLFHSVFKQRDFELFEEKIIRNKLERSLIPMLDHVQQKGSVVDLQDVFNRFTFDNICSVVLGCDPNCLSVDLPDVVCEKAFNEIEEGIFYRHKVPSALWKLQKWLQIGEEKNMTNACKTFDEFIYANIASKREELNKCNKNDEIVDLLTMLMKKDKGSQVVVHDDKFLRDAAFNLFVAGRDTITSALTFFFYLVATHPLVEAKILEEIKEIFGSINNIEKKLGVDDLKKLVYLQGAICEALRLFPPIPFERKQAIKGDILPSGHIVKPNTNILFFVYSMGRLEEIWGKDCLEFKPERWISERGGIVHVPSYKFNSYNAGPRTCLGKDLSMIQIKMTAIAILSKYCVQVEDGHVPFLSHSIVLLMKNGFKVRITKREI 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00042 507 PRINTS E-class P450 group I signature 317 343 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00042 507 PRINTS E-class P450 group I signature 453 476 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00042 507 PRINTS E-class P450 group I signature 297 314 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00042 507 PRINTS E-class P450 group I signature 364 382 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00042 507 PRINTS E-class P450 group I signature 443 453 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00042 507 PRINTS P450 superfamily signature 453 464 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00042 507 PRINTS P450 superfamily signature 308 325 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00042 507 PRINTS P450 superfamily signature 365 376 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00042 507 PRINTS P450 superfamily signature 444 453 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00042 507 SUPERFAMILY Cytochrome P450 37 505 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00042 507 CDD CYP86A 69 498 - -
Trre12g00042 507 PANTHER CYTOCHROME P450 23 500 - -
Trre12g00042 507 Pfam Cytochrome P450 43 499 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00042 507 Gene3D Cytochrome P450 17 507 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00042 Trre-Chr12 272744 274267 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00042 13 506 Cytochrome P450 AT2G23180 43.625 3.02e-148 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00042 - - aprc:113867564 672.159