Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00040 ATGTCCCTAGCTAGCTGTGGCTGTCACACTCATCCTCACCTTATTCCTATATGCTTTTCATCAAACAAAATCACTGAAAACTCCTGCCTTCACAAATTGGCCTTTTATTGGAGATTTGACAACTTTGTGAAAGTCCTTGGACATGATCCTAATTGTCTTTCCATTGATTTTCCTGAAGTTGCGGCCGAGAAGGCTTTTAACCAAGCTGAAGAATCTATCTTCTATAGACACACTGTGCAGGTTTGTGTTTGGAAGTTGCAAAGCTGGCTTCAAATTGGTGAAGAGAAAAAAATGACTGAGGCATGCAAAATATTTGATCAATTCCTATTTTCATGTATAGCTTCAAAGCGTGAAGAGCTTGTGAAAAATTGTAACAAAAATGATATCGATGCTGAAAGTGATGAAACTCATCATGTTGATTTGCTAACGGCGTTGATTAGAGAAGAAAAAAAGAATAAGGATAGTAAATCAAATGGTGACAAGTTTCTAAGAGATGCTGCATTCAATCTCTTTGTAGCGGGGAGAGATACTATAACTTCGGCGCTTACATGGCTTTTTCCACCTATACCTTTTGAGAGAAAGGAAGCAGTCACACCCGATATACTTCCAAGTGGTCATCATGTTAATCCAAATACAATGATATTGTTTTCTTTGTATGCAATGGGAAGGGATAAAGATATTTGGGGAGAAGATTACTTGGAGTTCAAGCCAGAGAGGTGGATTTCTGAGAGAGGAGGTATTGTTTATGCGCCGTCTTACAAATTTTTTAGTTTTAATGCTGGACCTAGGACTTGTTTGGGAAGAGATTTGGCTTTCATTCAAGTTAAGATGATAGCTGCTTCTATTTTGTGGAACTATTGTGTTCATGTTGTGGATGTTAATCAAGTCACTCCCAACCTTTCAATTGTACTTCTCATGAAACATGGTCTCAAGGTTAAGATAACTAAAAGGGAAATTTAA 960 0.376 MSLASCGCHTHPHLIPICFSSNKITENSCLHKLAFYWRFDNFVKVLGHDPNCLSIDFPEVAAEKAFNQAEESIFYRHTVQVCVWKLQSWLQIGEEKKMTEACKIFDQFLFSCIASKREELVKNCNKNDIDAESDETHHVDLLTALIREEKKNKDSKSNGDKFLRDAAFNLFVAGRDTITSALTWLFPPIPFERKEAVTPDILPSGHHVNPNTMILFSLYAMGRDKDIWGEDYLEFKPERWISERGGIVYAPSYKFFSFNAGPRTCLGRDLAFIQVKMIAASILWNYCVHVVDVNQVTPNLSIVLLMKHGLKVKITKREI 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00040 319 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 258 267 IPR017972 GO:0005506|GO:0016705
Trre12g00040 319 SUPERFAMILY Cytochrome P450 30 317 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00040 319 Gene3D Cytochrome P450 25 185 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00040 319 Pfam Cytochrome P450 186 312 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00040 319 Pfam Cytochrome P450 81 186 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00040 319 PANTHER CYTOCHROME P450 185 312 - -
Trre12g00040 319 PRINTS P450 superfamily signature 265 276 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00040 319 PRINTS P450 superfamily signature 173 190 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00040 319 PRINTS P450 superfamily signature 256 265 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00040 319 Gene3D Cytochrome P450 186 319 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00040 319 PRINTS E-class P450 group I signature 162 179 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00040 319 PRINTS E-class P450 group I signature 255 265 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g00040 319 PRINTS E-class P450 group I signature 265 288 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00040 Trre-Chr12 262789 264325 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00040 37 317 Cytochrome P450 AT2G23180 39.403 6.99e-79 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00040 - - tpra:123904061 502.671