Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00033 ATGGGATTTGGTAATGAAGTTCATTCTGTTGAAGAGTTTAGTTTAGATGCTAAGTGGCTTATAGATCCTAAACAATTATTTGTTGGTCCTAAGATTGGAGAAGGTGCTCATGCTAAAGTCTATGAAGGAAAATATAAAAATCAGAATGTTGCTGTTAAGATTATCAACAAGGGAGAAACCCTTGAAGAGATTTCAAGGAGAGAGGGTCGGTTTGGAAGAGAGGTTGCTATGTTGTCGAAAGTTCGACACAAAAATTTAGTCAAGTTTATTGGGGACTGCAAAGAACCTGTGATGGTTATAGTAACTGAACTTCTATTAGGTGAAACTTTGGGTAAATATCGCTTGAATAACTTGATCTTGACCGGAGATCATAGGACAGTTAAACTTGCTGATTTCGGTCTAGCCAGAGAGGAGTCATTAGCAGAAATGATGACTGCCGAAACAGGAACATATCGATGGATGGCTCCAGAACTTTACAGCACTGTTACTCTAAGACAAGGTGAGAAGAAGCATTACAACCATAAAGTGGATGCCTACAGCTTTGCAATTGTGTTGTGGGAGCTCATCCATAACAAGTTGCCATTTGAAGGCATGTCTAATTTACAGGCAGCATATGCTGCTGCTTTTAAGAATACAAGGCCTAGTGCTGAAGATCTACCAGAGGATTTAGCTATGATTATGCTCCTTCGGTATATCTCTACCATTTCACCGTCAGAACCAGTTGTTCCGATGCGGATTGCTTCATCAGATAATATTGTATTGCCACCAGAATCTCCCGGTACAAGTGCATTAATGTTTCGACGAGATGACTCTGGAGAAACACCAAAAGCCAATGTGGAAGAGAGGTTCAAAGGGTATTTCTTCTGCTTCAACCAGTGTTACTGA 885 0.4023 MGFGNEVHSVEEFSLDAKWLIDPKQLFVGPKIGEGAHAKVYEGKYKNQNVAVKIINKGETLEEISRREGRFGREVAMLSKVRHKNLVKFIGDCKEPVMVIVTELLLGETLGKYRLNNLILTGDHRTVKLADFGLAREESLAEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNHKVDAYSFAIVLWELIHNKLPFEGMSNLQAAYAAAFKNTRPSAEDLPEDLAMIMLLRYISTISPSEPVVPMRIASSDNIVLPPESPGTSALMFRRDDSGETPKANVEERFKGYFFCFNQCY 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00033 294 Gene3D Phosphorylase Kinase; domain 1 14 105 - -
Trre12g00033 294 ProSiteProfiles Protein kinase domain profile. 26 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g00033 294 Gene3D Transferase(Phosphotransferase) domain 1 114 240 - -
Trre12g00033 294 ProSitePatterns Protein kinases ATP-binding region signature. 32 53 IPR017441 GO:0005524
Trre12g00033 294 SUPERFAMILY Protein kinase-like (PK-like) 17 229 IPR011009 -
Trre12g00033 294 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 19 223 - -
Trre12g00033 294 Pfam Protein tyrosine and serine/threonine kinase 29 113 IPR001245 GO:0004672|GO:0006468
Trre12g00033 294 FunFam Kinase suppressor of Ras 1 15 105 - -
Trre12g00033 294 Pfam Protein kinase domain 116 203 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00033 Trre-Chr12 225070 227771 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00033 9 294 MAP Kinase Kinase Kinase AT5G50180 62.500 8.77e-150 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Trre12g00033 Pkinase 1.1e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00033 - - gmx:100792887 479.559