Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00029 ATGGTGAAACCAATATTTCTAACCCACCATATACGTTTCATAACAACTTTTTCTTCTTCTAGATTCTTCCATCCACTCCGATTCCTCTCCACAACCCCAACCCCAACCCCATACCCACTCCAATACGAACTTATCATTAACCGCCCCGACCTCCCTAAACCCAACCCTCACCGTCGAACCGCTAAACCCAACGGTTCACCCGAACCAATCCAACCCGACTCTCTCCAAAACTGGGTCGACGATAAACTAACCACCGAACCCGGTTCATCTGAACTCGATAAAGCAAAGAGGAAATACTATAACAAAAGGAGGAAGAGAATGTATGGTTCTGATTCCGATGAAGATGATCGGAGAAATGAGGAACAGTTTGTTGAATTGAAACCTGAAGTTGTTGAGTTAAGAACTTTGCATAGAAGAGAAGAAGAATTGTATTTTTATGATGCTTTTACTTATCCTTGGGAGAAAGATAAACATTATAAAATGGTTTATCAGTTAGAGAAAAAGTTTTTTCCTGATCAATGTTTGGATAAAGCTTTTCTTAAACCAGGTCAATCTAATCCCGTTTCGAATTTTTCGAATAATTCGAATGCAAATGTTAGGAACTTAAAAGTTGGTGTTTTTGGTCGTGTTGGTGTTGGGGAGAATAAAGATGAGGTTGGTGATAACAAGTTAGTGTTTTTTGAGGAGAATGTGAAAGGGGAAGAAAGTGAAAAGGAAAAGGGTAAGAAAGGTGAGAAGAAGGTTGAGGAGTTTTTTAAGGGTTTGAAGAAAGATGTTGAAATTGAAGAGCCATTTTTTTCTTCAAGGAGGACTGGTCTTCCTCCTGTTTGGGATAGTCCACATGGGACAGTGCTTTTGATTAACAAACCTAAAGGTTGGACTTCTTTCACAGTTTGTGGAAAGCTTCGCCGCCTTGTCAAAGTGAAAAAGGTAGGCCATGCCGGAACTCTTGACCCAATGGCTACTGGTTTATTGATTGTTTGTGTTGGCAAAGCAACAAAACTGGTGGATAGATATCAAGGGATGATTAAGGGTTATAGTGGGGTTTTCCGCTTAGGGGAGGCTACTTCAACATGGGATGCTGATTCACCAGTCATTCAGCGTGAGCCATGGGAGCACATCAAAGACGAGGACATAAAGAAAAGTGCCTTGTCCTTTTGTGGGGAGATTTGGCAAGTTCCTCCTATGTTTTCTGCTATTAAAGTTGGAGGTGAAAAGATGTACAAGAAAGCAAGGAGAGGAGAAAGCATTGAACTTTCGCCTAGACGAATTTCAATTTTCCAATTTGACATAGAACGTAGCTTGGATGACAGGCAAAATTTGATTTTTAGAGTGACTTGTTCTAAAGGAACATATATTCGGTCACTCTGTGCAGATTTTGGAAAGGCTCTTGGAAGCTGTGCCCATTTAACTGCTCTCCGAAGAGATTCAATTGGACAATATTTAGCAGATGATGCATGGGACTTTCAAGATCTGGAAGAGGCTATCACCAAAACTTATCTTTAA 1506 0.405 MVKPIFLTHHIRFITTFSSSRFFHPLRFLSTTPTPTPYPLQYELIINRPDLPKPNPHRRTAKPNGSPEPIQPDSLQNWVDDKLTTEPGSSELDKAKRKYYNKRRKRMYGSDSDEDDRRNEEQFVELKPEVVELRTLHRREEELYFYDAFTYPWEKDKHYKMVYQLEKKFFPDQCLDKAFLKPGQSNPVSNFSNNSNANVRNLKVGVFGRVGVGENKDEVGDNKLVFFEENVKGEESEKEKGKKGEKKVEEFFKGLKKDVEIEEPFFSSRRTGLPPVWDSPHGTVLLINKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIKKSALSFCGEIWQVPPMFSAIKVGGEKMYKKARRGESIELSPRRISIFQFDIERSLDDRQNLIFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYLADDAWDFQDLEEAITKTYL 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00029 501 Gene3D Pseudouridine synthase 278 500 - -
Trre12g00029 501 Pfam tRNA pseudouridylate synthase B C-terminal domain 454 497 IPR032819 -
Trre12g00029 501 PANTHER TRNA-PSEUDOURIDINE SYNTHASE 169 499 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Trre12g00029 501 Hamap tRNA pseudouridine synthase B [truB]. 281 501 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Trre12g00029 501 NCBIfam tRNA pseudouridine(55) synthase TruB 283 492 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Trre12g00029 501 FunFam tRNA pseudouridine synthase B 278 500 - -
Trre12g00029 501 CDD PseudoU_synth_EcTruB 284 495 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Trre12g00029 501 MobiDBLite consensus disorder prediction 47 75 - -
Trre12g00029 501 Pfam TruB family pseudouridylate synthase (N terminal domain) 303 453 IPR002501 GO:0006396
Trre12g00029 501 SUPERFAMILY Pseudouridine synthase 283 496 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00029 Trre-Chr12 201337 206403 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00029 284 475 NAC Transcription Factor Family AT3G57150 33.333 2.60e-20 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00029 K03177 - gmx:100793939 652.129