Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04982 ATGACGACGACGACGGATACCACATCACGCGGTTCAACATCATCCTCCAATGGACTCCTCACCGTCACCATTGCCAGCAGCACTCACCCTCACGGCCCCTCTGCTAACGACGATGATGACGACCTTCTCGTTGATCCTGACGATCCTTTCAACATTACTCAAACCAAGAATGCTCCTCCCGAAACCCTCAAGCGTTGGCGACAAGCATCATTTGTGCTCAATGCATCCAGACGTTTTAGATATACTCTCGACTTGAAAAAGGAAGAGGAGAAAGAGCAAAAGAAAAGCATGATCAGAGCTCATGCACAAGTCATCAGAGCAGCTTTGCTTTTCAGATTGGCCGGTGAACGCCAACTAGTAACAGGTACATCAGTGGCACCCACAACTCCGGGTGGTGACTATGAAGTTGGACTCGAACAACTTGTTTCAATGTCCAAGAATCAAAATATTTCTGCTTTACAGCAATATGGAGGGGTTAAAGGCTTATCAGATTTTCTAAAATCAGATCTGGATAAAGGGATTAGTGGAGATGACGTTGATCTATCAAGGAGGAAAAATGCATTTGGAACTAATACATATCCTCGGAAAAAGGGTAGAAGTTTATGGAGGTTTCTATGGGAAGCTTGGCAAGATCTGACCCTTATAATATTGATTATAGCAGCTGCAGTATCATTAGTGCTTGGAATAAAAACAGAGGGTTTGGAAGAAGGATGGTATGATGGAGGAAGCATTGCTTTTGCAGTTTTACTTGTCATTGTAGTTACAGCTGTCAGTGATTATCGGCAATCTCTTCAGTTTCAGAACTTGAATGCAGAAAAACAAAATATACAATTGGAGGCCATAAGAGGTGGTAGAACAATAAAAATATCGATATTTGAAATTGTTGTTGGTGATGTACTGCCCCTTAAAATAGGAGATCAGGTTCCTGCTGATGGAGTTTTAATTACTGGTCACTCACTTGCCATTGATGAATCCAGTATGACTGGTGAAAGCAAGATTGTTCACAAGGATCAAAAAGCACCATTTTTAATGTCAGGTTGCAAAGTAGCAGACGGAGTTGGTTCTATGCTGGTAACTAGTGTTGGTATAAATACTGAGTGGGGATTGTTGATGGCAACTATCTCAGAGGATACGGGAGAAGAGACTCCATTACAGGTACGATTGAATGGAGTAGCAACTTTTATTGGTATCGTTGGGCTTACTGTAGCTGCAGCTGTTCTTGTAGTCCTCTTGGGAAGATACTTTTCTGGCAATACGAAAGATTTAGATGGAAAAGTTCAATTTGTTGCTGGAGAGACTAGTATCAGCGATGCTGTAGATGCGAGCATCAAAATTTTTACCATTGCAGTAACAATTGTGGTTGTTGCAGTGCCAGAAGGTCTACCTTTAGCAGTTACCTTAACCCTAGCATACTCGATGCGGAAGATGATGGCAGACAAAGCCTTGGTACGAAGATTGTCAGCTTGCGAAACCATGGGCTCTGCTACGACAATTTGCAGCGATAAAACTGGAACTTTGACCTTAAACCAGATGACTGTAGTTGAGGCATATATTGGGAGGAAGAAATTAAATCCACCAGATGACTCGTCAAAATTGCATTCAGAAGTTTTATCTCTGATAAATGAAGGCATAGCGCAAAATACAACAGGCAATATTTTTGTTCCTAAGGATGGCGGAGAGGCAGAGGTTTCAGGATCTCCTACAGAGAAGGCAATTCTATCATGGGCTTTGAAGTTGGGAATGAGTTTTGAACGAATCAGATCAAGTACAAAGATTATCCATGTCTTCCCCTTTAATTCTGAGAAAAAGCGAGGTGGTGTTGCTGTGAAACTGGCGGACTCTGGAGTGCATATACATTGGAAAGGAGCTGCTGAGATAGTTCTAGGAACGTGTACCCAATATCTTGATTCAGATGGTCACCGGCAATCTATTGAAGAAGAGAAGGCATTCTTCAAGAAGGCAATTGATGACATGGCTGCTCAGAGCTTGCGTTGTGTTGCTATTGCATACCGATCATATGAATTGAACAAAATTCCATCTAAGGAGGAGGATTTAGACCAGTGGACCTTACCCGAACACGAGCTTGTTTTGCTTGCTATTGTTGGAATAAAGGATCCTTGCCGCCCTGGAGTCAAAGAAGCTGTGAGATTATGTACTGAGGCTGGTGTTAAGGTACGCATGGTTACTGGGGACAATCCTCAAACAGCAAAAGCAATAGCTTTGGAGTGTGGAATACTGGTTTCAACTGAAGATGCAGTTGAGCCAAATGTAATTGAAGGAAAGACATTCCGTCAATTCTCTGAAAAGGAAAGGGAACAAGTTGCTAAGAAAATAACTGTGATGGGAAGATCATCTCCAAATGACAAGCTTTTGCTTGTGCAAGCACTACGTAAAGGAGGTGAAGTTGTTGCTGTCACAGGAGATGGAACTAATGATGCCCCTGCTCTTCATGAGGCAGATATTGGTCTTTCTATGGGTATCCAAGGAACTGAAGTTGCAAAAGAAAGCTCAGATATTATAATCCTGGATGATAACTTTGCATCAGTAGTAAAGGTTGTTCGTTGGGGTCGTTCTGTTTATGCAAATATTCAGAAATTTATTCAGTTCCAACTCACTGTAAATGTTGCTGCTCTTGTTATAAATGTTGTGGCAGCGGTATCTTCTGGTGATGTTCCTTTAAATGCAGTACAGCTTCTGTGGGTTAACCTTATTATGGACACACTTGGGGCTCTTGCTCTGGCTACCGAGCCACCGACTGACAGCCTTATGCACAGATCACCAGTTGGCCGAAGAGAACCTCTTATAACGAATATCATGTGGAGGAACTTGTTCGTACAGGCTCTTTATCAAGTGATTGTTCTTCTGGTTCTTAACTTTGGTGGTGAAAGTATTCTACGTCAAGATTCTAGGACTCATACCTTACAAGTGAAGAATACTTTAATTTTCAACGCATTCGTCCTGTGCCAAATATTCAATGAATTCAATGCTCGAAAGCCAGAAGGAATGAATGTCTTCAAGGGAGTGACTAAGAATCGTCTCTTCATGGGAATTGTCGGAATGACCTTTATACTCCAGATAATCATCATCGAGTTCCTTGGGAAGTTCACAACGACGGTGAGGCTTAATTCGATGCAGTGGCTTGTTTGTCTTTGTATTGGGCTGTTCAGCTGGCCACTTGCAATACTTGGAAAATTAATTCCAGTTCCCAAAACACCATTGTCACGATGCGTCTTGAAGGTGTTTAGGCGCTTGAAGAAATCGCGGACTGCATAA 3273 0.4219 MTTTTDTTSRGSTSSSNGLLTVTIASSTHPHGPSANDDDDDLLVDPDDPFNITQTKNAPPETLKRWRQASFVLNASRRFRYTLDLKKEEEKEQKKSMIRAHAQVIRAALLFRLAGERQLVTGTSVAPTTPGGDYEVGLEQLVSMSKNQNISALQQYGGVKGLSDFLKSDLDKGISGDDVDLSRRKNAFGTNTYPRKKGRSLWRFLWEAWQDLTLIILIIAAAVSLVLGIKTEGLEEGWYDGGSIAFAVLLVIVVTAVSDYRQSLQFQNLNAEKQNIQLEAIRGGRTIKISIFEIVVGDVLPLKIGDQVPADGVLITGHSLAIDESSMTGESKIVHKDQKAPFLMSGCKVADGVGSMLVTSVGINTEWGLLMATISEDTGEETPLQVRLNGVATFIGIVGLTVAAAVLVVLLGRYFSGNTKDLDGKVQFVAGETSISDAVDASIKIFTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTVVEAYIGRKKLNPPDDSSKLHSEVLSLINEGIAQNTTGNIFVPKDGGEAEVSGSPTEKAILSWALKLGMSFERIRSSTKIIHVFPFNSEKKRGGVAVKLADSGVHIHWKGAAEIVLGTCTQYLDSDGHRQSIEEEKAFFKKAIDDMAAQSLRCVAIAYRSYELNKIPSKEEDLDQWTLPEHELVLLAIVGIKDPCRPGVKEAVRLCTEAGVKVRMVTGDNPQTAKAIALECGILVSTEDAVEPNVIEGKTFRQFSEKEREQVAKKITVMGRSSPNDKLLLVQALRKGGEVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDSLMHRSPVGRREPLITNIMWRNLFVQALYQVIVLLVLNFGGESILRQDSRTHTLQVKNTLIFNAFVLCQIFNEFNARKPEGMNVFKGVTKNRLFMGIVGMTFILQIIIIEFLGKFTTTVRLNSMQWLVCLCIGLFSWPLAILGKLIPVPKTPLSRCVLKVFRRLKKSRTA 1090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04982 1090 Pfam haloacid dehalogenase-like hydrolase 496 820 - -
Trre11g04982 1090 FunFam Calcium-transporting ATPase 58 114 - -
Trre11g04982 1090 SFLD p-type atpase 481 858 IPR044492 -
Trre11g04982 1090 SFLD Haloacid Dehalogenase 481 858 - -
Trre11g04982 1090 MobiDBLite consensus disorder prediction 1 59 - -
Trre11g04982 1090 SUPERFAMILY Calcium ATPase, transduction domain A 278 372 IPR008250 -
Trre11g04982 1090 FunFam Calcium-transporting ATPase 509 706 - -
Trre11g04982 1090 ProSitePatterns E1-E2 ATPases phosphorylation site. 501 507 IPR018303 -
Trre11g04982 1090 Pfam E1-E2 ATPase 277 477 - -
Trre11g04982 1090 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 506 703 IPR023299 GO:0000166
Trre11g04982 1090 Pfam Ca2+-ATPase N terminal autoinhibitory domain 47 90 IPR024750 GO:0005516
Trre11g04982 1090 Gene3D - 180 375 - -
Trre11g04982 1090 SMART Cation_ATPase_N_a_2 155 229 IPR004014 -
Trre11g04982 1090 CDD P-type_ATPase_Ca_PMCA-like 181 939 - -
Trre11g04982 1090 Gene3D - 60 112 - -
Trre11g04982 1090 FunFam Calcium-transporting ATPase 207 264 - -
Trre11g04982 1090 FunFam Calcium-transporting ATPase 699 851 - -
Trre11g04982 1090 PANTHER CATION TRANSPORTING ATPASE 99 1068 - -
Trre11g04982 1090 FunFam Calcium-transporting ATPase 255 375 - -
Trre11g04982 1090 MobiDBLite consensus disorder prediction 1 32 - -
Trre11g04982 1090 Gene3D - 207 1056 - -
Trre11g04982 1090 PRINTS Sodium/potassium-transporting ATPase signature 242 262 - -
Trre11g04982 1090 PRINTS Sodium/potassium-transporting ATPase signature 492 513 - -
Trre11g04982 1090 PRINTS Sodium/potassium-transporting ATPase signature 618 636 - -
Trre11g04982 1090 SUPERFAMILY Calcium ATPase, transmembrane domain M 156 1068 IPR023298 -
Trre11g04982 1090 SUPERFAMILY HAD-like 497 911 IPR036412 -
Trre11g04982 1090 Gene3D - 496 851 IPR023214 -
Trre11g04982 1090 PRINTS P-type cation-transporting ATPase superfamily signature 699 710 - -
Trre11g04982 1090 PRINTS P-type cation-transporting ATPase superfamily signature 721 731 - -
Trre11g04982 1090 PRINTS P-type cation-transporting ATPase superfamily signature 806 825 - -
Trre11g04982 1090 PRINTS P-type cation-transporting ATPase superfamily signature 499 513 - -
Trre11g04982 1090 PRINTS P-type cation-transporting ATPase superfamily signature 323 337 - -
Trre11g04982 1090 PRINTS P-type cation-transporting ATPase superfamily signature 830 842 - -
Trre11g04982 1090 Pfam Cation transporting ATPase, C-terminus 891 1066 IPR006068 -
Trre11g04982 1090 FunFam Calcium-transporting ATPase 823 1070 - -
Trre11g04982 1090 Pfam Cation transporter/ATPase, N-terminus 157 224 IPR004014 -
Trre11g04982 1090 NCBIfam calcium-translocating P-type ATPase, PMCA-type 145 1068 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Trre11g04982 1090 NCBIfam HAD-IC family P-type ATPase 441 529 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre11g04982 1090 NCBIfam HAD-IC family P-type ATPase 772 886 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre11g04982 1090 Gene3D - 509 706 IPR023299 GO:0000166
Trre11g04982 1090 FunFam Calcium-transporting ATPase 9 plasma membrane-type 353 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04982 Trre-Chr11 60406275 60420208 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04982 12 1090 Primary Pumps ATPases AT3G21180 76.173 0.0 1654
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04982 K01537 - gmx:100817367 1790.78