Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04981 ATGCAATTAGCTTCAAACACCGATAAGGACGATGAATGTTCAGAATGCCAACCCATCTTGAATCACCAAGACTCCTCCTCCTCCTTTTCCTGCGAAATTATTCCTGATGATAATGACGATGATATAGAAAATGTTCCTGTTCACGACTCTGACCCACAATGCCGAATATGCCTTGATCTTGGAGGACAAGACTTAATTGCCCCTTGCCATTGCAAAGGTACGCAAAAGTATGTCCACAGATCTTGTCTGGATAATTGGAGGTCTACCAAGGAGGGCTTTGCTTTTTCTCACTGTACAGAGTGCAGAGCTGTCTTCATATTACGAGCAAATGTCCCAAAAGATCGGTGGTGGTTGAGGTTGAAATTTCAGTTCCTTGTTGCCAGAGATCATGCATTCATTTTCATCATTGTTCAACTGGTTGTTGCTTTCTTGGGAGTTCTTATTTACAAATTCTATGGAGATGAACTTAGAGAAATGTTTGGTTACGAAGAACATCCATATGGATTTTATACAATGGCTGTTCTTGCCATTATTTTGGTGGGTTTGCTCTATGGCTTCTTTATAGCGATAATATGTGGCCAAAGAATCAATGAACGCCACTACCATGTTCTTGCGAAACAAGAACTGACAAAGGAATATGTGGTAGAAGATCGAGAACATGTAAAGAATGTGCCTGAACTCGACCCCAGCCATGTGACAGAACTAAGGATGTTGGGCCTTTACTAG 726 0.4132 MQLASNTDKDDECSECQPILNHQDSSSSFSCEIIPDDNDDDIENVPVHDSDPQCRICLDLGGQDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFSHCTECRAVFILRANVPKDRWWLRLKFQFLVARDHAFIFIIVQLVVAFLGVLIYKFYGDELREMFGYEEHPYGFYTMAVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYVVEDREHVKNVPELDPSHVTELRMLGLY 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04981 241 Pfam RING-variant domain 54 101 IPR011016 GO:0008270
Trre11g04981 241 CDD RING_CH-C4HC3_MARCH 54 102 - -
Trre11g04981 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 106 IPR013083 -
Trre11g04981 241 SMART ringv_2 53 102 IPR011016 GO:0008270
Trre11g04981 241 SUPERFAMILY RING/U-box 50 105 - -
Trre11g04981 241 MobiDBLite consensus disorder prediction 1 28 - -
Trre11g04981 241 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 174 241 - -
Trre11g04981 241 ProSiteProfiles Zinc finger RING-CH-type profile. 46 108 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04981 Trre-Chr11 60398804 60402163 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04981 1 200 C3H Transcription Factor Family AT1G50440 59.434 6.29e-85 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04981 - - gmx:100789593 434.876