Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04980 ATGTCATCTTCGGATGCTGAGGCTCTATTGAAGTTCAAGGGTTCATTAACAAATGCGGTGTCCCTCAGCAGTTGGGAACCATCCATAAACCCAAAACCACCTTGCACCGGAAATATTTCCAATTGGGTGGGCTTGTTTTGCTTGAATGACAGGGTGTTGGGGTTACGCCTTGAGAGCATGGGGTTAACCGGAAATATCAATATAGAATCTCTTGCTTCAATGCCAATGTTGCGGATGGTTTCCCTGATGAACAATACATTTGTGGGTGCCATGCCCAACATCAAGATGCTATCCCATTTGAGGTCTGTCTACTTGTCCTATAATCATTTCTCAGGACAGATACCTGACGATGCATTTACGGGTATGCCTAGGTTGAGGAAAGTGTATTTGTCTAATAATGAGTTCACCGGTAAAATTCCATCCTCTCTCGCTATCTTGCCTACTCTCCTCGTCCTCAGGCTTGACGCAAACAAGTTTCAAGGTGAGATCCCCAATTTTCATCACAAGAATAATTTGAAGATTATCAACTTCTCTAACAATGACCTAGAGGGTCCCATCCCACCTAATTTAAGAACCTTTGACGCCTCCTCTTTTAGCGGAAACGCACTTCTATGTGGACCTCCTTTGACGAATAAGTGTCAATTAGGAAACCCCAAAATGCTCGTTATGAAAACTTTACTTATTGTGATCATGATAGCCTTTATAGTAGCCATTGTGGTTTCAATATTGATCATCTCCCGCTTGAGGTCACAAAAGAAGCAGGTAAACGAAGAACATTATTCTACAACCTCAAAATTCCATACACAAGCATCTAGAAAATATGTTAAGCCTCCTGCAGTTTATGTGAAAACCAAAAGTTTGGCCGAACACTATGATCCTAGAAGTCCTAAGCCAGATCAACACAGTCATAGTCATTCCAAAAAGGAAAAGGGGGAACAAGGAAAGCTTATATTTCTCAAGAAGGATGGACTCAAATTTGATTTGCAGGATTTGCTAAGGGCCTCCGCTGAAATTCTAGGAAGTGCCTCCTTCGGTTCATCCTACAAAGCCGTGATTTTGGACGGCCAAGCTGTGGTTGTCAAGAGGTACAAGCAAATGAACAATGTGCAAAGAGAAGAGTTCCATGAACATATGAGAAGGCTAGGAAACCTCAGCCATCCCAATGTTCTACCTCTCCTTTCTTATTATTATAGAAGAGAAGAAAAGCTTTTGATCTCTGCCTTTGTTCACAATGGTTGCTTGGCCAGTCATCTTCATGGTAACCACAACTACCATAAGCCAGGACTTGATTGGGCAACCCGTTTGAAAATCGTGAAAGGTGTAGCGAGGGGTTTGTCATATCTATATAGTGCACTCCCAAGCGTGATTGTGCCTCATGGTCATCTAAAATCTTCCAATGTACTTTTAGATGAATCCTTTGAGCCTCTGCTAACTGATTATGCACTCAGTCCTTTGATCAATCTTGACCACGCACAACAAATCATCATGCCTTACAAATCCCCAGAGTATGCTCAACTTGGGCGCATTACAAAGAAAACTGATGTGTGGAGTTTTGGGATTCTAATATTGGAGATTCTGACGGGTAAATTCCCAGAGAACTATATTACACCAAGGCATAATAGTGATTCAGACTTAGCCAGTTGGGTAAATATGATGATTACCGAGAAACGCACAAGCGATGTATTTGACGTAGAGATGGGAGGAGTAGGTACTAGTAAAGCTGAATTGCTCAAACTCTTAAAGATTGGACTCAGTTGTTGTGAGGAGAATGTGGAAAGAAGGTTGGACATCAAAGAGGCTCTGGAGCAGATTGAAGACTTGAATGAGGGTCAAACAAATACTAATGATCATATTGTTGGAGAGTATTCTTCCTCCCTTTTCACCACCACTACTACTGAAAGGGATGCTTACAGAGCTGTGTGA 1923 0.4191 MSSSDAEALLKFKGSLTNAVSLSSWEPSINPKPPCTGNISNWVGLFCLNDRVLGLRLESMGLTGNINIESLASMPMLRMVSLMNNTFVGAMPNIKMLSHLRSVYLSYNHFSGQIPDDAFTGMPRLRKVYLSNNEFTGKIPSSLAILPTLLVLRLDANKFQGEIPNFHHKNNLKIINFSNNDLEGPIPPNLRTFDASSFSGNALLCGPPLTNKCQLGNPKMLVMKTLLIVIMIAFIVAIVVSILIISRLRSQKKQVNEEHYSTTSKFHTQASRKYVKPPAVYVKTKSLAEHYDPRSPKPDQHSHSHSKKEKGEQGKLIFLKKDGLKFDLQDLLRASAEILGSASFGSSYKAVILDGQAVVVKRYKQMNNVQREEFHEHMRRLGNLSHPNVLPLLSYYYRREEKLLISAFVHNGCLASHLHGNHNYHKPGLDWATRLKIVKGVARGLSYLYSALPSVIVPHGHLKSSNVLLDESFEPLLTDYALSPLINLDHAQQIIMPYKSPEYAQLGRITKKTDVWSFGILILEILTGKFPENYITPRHNSDSDLASWVNMMITEKRTSDVFDVEMGGVGTSKAELLKLLKIGLSCCEENVERRLDIKEALEQIEDLNEGQTNTNDHIVGEYSSSLFTTTTTERDAYRAV 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04980 640 MobiDBLite consensus disorder prediction 290 311 - -
Trre11g04980 640 Pfam Leucine rich repeat N-terminal domain 3 47 IPR013210 -
Trre11g04980 640 Gene3D Ribonuclease Inhibitor 168 213 IPR032675 -
Trre11g04980 640 Gene3D Ribonuclease Inhibitor 2 167 IPR032675 -
Trre11g04980 640 SUPERFAMILY Protein kinase-like (PK-like) 337 606 IPR011009 -
Trre11g04980 640 Gene3D Phosphorylase Kinase; domain 1 299 408 - -
Trre11g04980 640 Gene3D Transferase(Phosphotransferase) domain 1 409 628 - -
Trre11g04980 640 FunFam pollen receptor-like kinase 1 301 408 - -
Trre11g04980 640 FunFam Pollen receptor-like kinase 1 409 618 - -
Trre11g04980 640 SUPERFAMILY L domain-like 32 208 - -
Trre11g04980 640 Pfam Leucine rich repeat 98 159 IPR001611 GO:0005515
Trre11g04980 640 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 4 609 IPR046959 -
Trre11g04980 640 Pfam Protein tyrosine and serine/threonine kinase 337 548 IPR001245 GO:0004672|GO:0006468
Trre11g04980 640 ProSiteProfiles Protein kinase domain profile. 333 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04980 Trre-Chr11 60392279 60394311 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04980 4 636 Receptor kinase-like Gene Family AT5G35390 47.239 0.0 550
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre11g04980 PK_Tyr_Ser-Thr 2.5e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04980 - - aprc:113854862 929.087