Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04979 ATGGGCGCGCGCTCTAATTCGATTGTGCGCGCACCTGCAGCATTTAATAATAATAATGTCAAGGTCCTGGTTGTTTTTCTGGTATTACTACTACTTTCATGCCCAGACATGTCAATGTCATCTTCGGATGCTGAGGCTCTATTGAAGTTCAAGGGTTCATTAACAAATGCGGTGTCCCTCAGCAGTTGGGAACCATCCATAAACCCAAAACCACCTTGCACCGGAAATATTTCCAATTGGGTGGGCTTGTTTTGCTTGAATGACAGGGTGTTGGGGTTACGCCTTGAGAGCATGGGGTTAACCGGAAATATCAATATAGAATCTCTTGCTTCAATGCCAATGTTGCGGATGGTTTCCCTGATGAACAATACATTTGTGGGTGCCATGCCCAACATCAAGATGCTATCCCATTTGAGGTCTGTCTACTTGTCCTATAATCATTTCTCAGGACAGATACCTGACGATGCATTTACGGGTATGCCTAGGTTGAGGAAAGTGTATTTGTCTAATAATGAGTTCACCGGTAAAATTCCATCCTCTCTCGCTATCTTGCCTACTCTCCTCGTCCTCAGGCTTGACGCAAACAAGTTTCAAGGTGAGATCCCCAATTTTCATCACAAGAATAATTTGAAGATTATCAACTTCTCTAACAATGACCTAGAGGGTCCCATCCCACCTAATTTAAGAACCTTTGACGCCTCCTCTTTTAGCGGAAACGCACTTCTATGTGGACCTCCTTTGACGAATAAGTGTCAATTAGGAAACCCCAAAATGCTCGTTATGAAAACTTTACTTATTGTGATCATGATAGCCTTTATAGTAGCCATTGTGGTTTCAATATTGATCATCTCCCGCTTGAGGTCACAAAAGAAGCAGGTAAACGAAGAACATTATTCTACAACCTCAAAATTCCATACACAAGCATCTAGAAAATATGTTAAGCCTCCTGCAGTTTATGTGAAAACCAAAAGTTTGGCCGAACACTATGATCCTAGAAGTCCTAAGCCAGATCAACACAGTCATAGTCATTCCAAAAAGGAAAAGGGGGAACAAGGAAAGCTTATATTTCTCAAGAAGGATGGACTCAAATTTGATTTGCAGGATTTGCTAAGGGCCTCCGCTGAAATTCTAGGAAGTGCCTCCTTCGGTTCATCCTACAAAGCCGTGATTTTGGACGGCCAAGCTGTGGTTGTCAAGAGGTACAAGCAAATGAACAATGTGCAAAGAGAAGAGTTCCATGAACATATGAGAAGGCTAGGAAACCTCAGCCATCCCAATGTTCTACCTCTCCTTTCTTATTATTATAGAAGAGAAGAAAAGCTTTTGATCTCTGCCTTTGTTCACAATGGTTGCTTGGCCAGTCATCTTCATGGTAACCACAACTACCATAAGCCAGGACTTGATTGGGCAACCCGTTTGAAAATCGTGAAAGGTGTAGCGAGGGGTTTGTCATATCTATATAGTGCACTCCCAAGCGTGATTGTGCCTCATGGTCATCTAAAATCTTCCAATGTACTTTTAGATGAATCCTTTGAGCCTCTGCTAACTGATTATGCACTCAGTCCTTTGATCAATCTTGACCACGCACAACAAATCATCATGCCTTACAAATCCCCAGAGTATGCTCAACTTGGGCGCATTACAAAGAAAACTGATGTGTGGAGTTTTGGGATTCTAATATTGGAGATTCTGACGGGTAAATTCCCAGAGAACTATATTACACCAAGGCATAATAGTGATTCAGACTTAGCCAGTTGGGTAAATATGATGATTACCGAGAAACGCACAAGCGATGTATTTGACGTAGAGATGGGAGGAGTAGGTACTAGTAAAGCTGAATTGCTCAAACTCTTAAAGATTGGACTCAGTTGTTGTGAGGAGAATGTGGAAAGAAGGTTGGACATCAAAGAGGCTCTGGAGCAGATTGAAGACTTGAATGAGGGTCAAACAAATACTAATGATCATATTGTTGGAGAGTATTCTTCCTCCCTTTTCACCACCACTACTACTGAAAGGGATGCTTACAGAGCTGTGTGA 2037 0.4202 MGARSNSIVRAPAAFNNNNVKVLVVFLVLLLLSCPDMSMSSSDAEALLKFKGSLTNAVSLSSWEPSINPKPPCTGNISNWVGLFCLNDRVLGLRLESMGLTGNINIESLASMPMLRMVSLMNNTFVGAMPNIKMLSHLRSVYLSYNHFSGQIPDDAFTGMPRLRKVYLSNNEFTGKIPSSLAILPTLLVLRLDANKFQGEIPNFHHKNNLKIINFSNNDLEGPIPPNLRTFDASSFSGNALLCGPPLTNKCQLGNPKMLVMKTLLIVIMIAFIVAIVVSILIISRLRSQKKQVNEEHYSTTSKFHTQASRKYVKPPAVYVKTKSLAEHYDPRSPKPDQHSHSHSKKEKGEQGKLIFLKKDGLKFDLQDLLRASAEILGSASFGSSYKAVILDGQAVVVKRYKQMNNVQREEFHEHMRRLGNLSHPNVLPLLSYYYRREEKLLISAFVHNGCLASHLHGNHNYHKPGLDWATRLKIVKGVARGLSYLYSALPSVIVPHGHLKSSNVLLDESFEPLLTDYALSPLINLDHAQQIIMPYKSPEYAQLGRITKKTDVWSFGILILEILTGKFPENYITPRHNSDSDLASWVNMMITEKRTSDVFDVEMGGVGTSKAELLKLLKIGLSCCEENVERRLDIKEALEQIEDLNEGQTNTNDHIVGEYSSSLFTTTTTERDAYRAV 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04979 678 SUPERFAMILY Protein kinase-like (PK-like) 375 644 IPR011009 -
Trre11g04979 678 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 27 647 IPR046959 -
Trre11g04979 678 Gene3D Ribonuclease Inhibitor 206 251 IPR032675 -
Trre11g04979 678 ProSiteProfiles Protein kinase domain profile. 371 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g04979 678 FunFam Pollen receptor-like kinase 1 447 656 - -
Trre11g04979 678 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 34 - -
Trre11g04979 678 Pfam Leucine rich repeat 136 197 IPR001611 GO:0005515
Trre11g04979 678 FunFam pollen receptor-like kinase 1 339 446 - -
Trre11g04979 678 Pfam Protein tyrosine and serine/threonine kinase 375 583 IPR001245 GO:0004672|GO:0006468
Trre11g04979 678 Gene3D Phosphorylase Kinase; domain 1 337 446 - -
Trre11g04979 678 Gene3D Transferase(Phosphotransferase) domain 1 447 666 - -
Trre11g04979 678 MobiDBLite consensus disorder prediction 328 349 - -
Trre11g04979 678 Gene3D Ribonuclease Inhibitor 40 205 IPR032675 -
Trre11g04979 678 Pfam Leucine rich repeat N-terminal domain 41 85 IPR013210 -
Trre11g04979 678 SUPERFAMILY L domain-like 70 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04979 Trre-Chr11 60392279 60394425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04979 19 674 Receptor kinase-like Gene Family AT5G35390 46.963 0.0 554
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre11g04979 PK_Tyr_Ser-Thr 2.8e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04979 - - pvu:PHAVU_005G185800g 931.398