Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04978 ATGTGGAAGGGGAGTAGAAAGGGAGGTGGAGGAGGAGGAGGAGGAGGAGGAAATGGATTGGTGGCAGTGGCTATTGACAAAGATAAAGGAAGCCAATACGCTCTCAAATGGGCAGCTGATAATCTTCTCAATAGAGGCCAAACCCTTATTCTAATCCATGTTTCCCTCGTCGCCGGCACCACATCCGCTTCTTCCAGAGGTTGCGAAGCCGCCATTATATGTAACGTCAGCAGTACTTCAGCTGCATCATCTCCACAAAGAAATCAACTTGATAACGCTACCAAGGATCTCTTTCTTACCTTCCATTGCTATTGCACACGCAAAGATATACAATGTCTGGATGTCCTACTTGAAGACACTGATGTTGTCAAAGCAATAACAGAATATGTTTCTCATGCTGCAATTGAGAACTTGGTCATTGGTTCACCGTCAAGGCATGGATTTATTAGGTGTGTGAGGTTTAAGTCATCAAGTACGCCAAGCAGCATATCAAAGGGGGCGCCAGATTTCTGTAATGTTTTTGTCATATCTAAGGGGAAAATCTCATCAGTTCGGAACTCTTCTCGTCCGGCCCCGCATACCTCCCCACTTCTGAGCCATATACATAACAATATAAATAATCAGGATTTAAATCAATCTGCAGATCAGATATGCTCTAGACGTATGAATTTGAGAGACAGGACGTCGATGAAACCTCACGGTTGGCATGATGAATCCACAAAATCTCCATTTAGAAGAGGAGGAAGAGGCACGAGTGGAATGTTATGTGTAGACTTCACAGAATCAGACACAGACATATCATTTGTAAGCTCTGGGAGGCCAAGCAGTGCTCGTTCATCCTCTGTTTACGACTACATTGACTCCGGTCGAACTTCACGAGTTTCTACCAGTTCAGATCGCAGCTTTGGATCCAACCGATTGGGAATCAAGTTCACTGAACCCGGTTCCCCAGATACCTCTTTTTCACAAGATACTAGTAGAACATCATTTTCATATTCATCTCAGAACATGGATGAAACAGAAGCTGATATGAGGAGACTGAAGCTTGAGTTAAAACAAACAATGGAAATGTACAATACAGCATGCAGAGAAGCGCTTACAGCACAACACAAGTTAATGGAGATGAGCAACTGGAAAATTGAAGAAGAAAAAAAATTAGAAGAGTCACAACTGTCCCAAGAAGCTGCACTGGCAATAGCCGAGAAAGAGAAAGCAAGAAGTAAGGCAGCCATGGAAACAGCTGCAGCAGCTAGAAAAATAGCAAACGTGGAATCACATAGAAAATCAAGTGTTCCAGTTAAGTCTCTTAAAGAAGCAGAGGACATGAGGAAGCTATTGGATAATTTAGCCCAAACTGATGTAAGATATAGGAGATACAATATTGAGGAGATTGAAGCAGCCACAAACATGTTTTCTGAAAAACTAAAAATTGGGGAAGGTGGTTATGGACCTGTTTATAAATGTTACCTTGATCACACTCCAGTGGCCGTGAAGGTTTTAAGTCCTGATGCGGCTCAAGGGAAATCACAGTTTCAGCAAGAGGTTGACATACTGAGTTGTATGCGCCACCCAAACTTGGTGCTTCTTTTAGGAGCGTGTCCAGAGTATGGTATATTGGTTTATGAATATATGGCGAATGGAAGCTTAGAAGATTGTCTGAATCGAAAAAAGAAGGGTGGTAGGGTTCTGTGTTGGCAGCTGAGGTTTCGGATTGCTGCAGAGATAGCCACGGGCTTGCTATTCCTACATCAGACGAAGCCTGAACCTTTGGTGCACCGTGATTTGAAACCCGGCAACATTTTGCTGGACCAGAATTATGTATGTAAGATTAGTGATGTTGGATTGGCAAGGCTGGTCCCTGTGATGGCTGAAAATGTAACACAGTGTCACATGACATCGGCAGCGGGAACATTCTGTTATATTGATCCCGAGTATCAACAAACAGGAATGCTTGGTGTAAAGTCGGACGTTTATTCTCTGGGGATCATATTTCTACAGTTATTGACTGGAAGACATCCAATGGGATTGGCTCACCATGCTGAACAGTCTATTGAGAATGGCACATTTGAGGAAATGCTTGACCAATCTTTATCGCACTGGCCCATTCAAGAAGCCCTAACCCTTGCAAATATAGCTGTAAATTGTGCACAACTCAGACGAAAAGACCGCCCAGACCTTGCCAAAGTAGTGTTGCCTGAGCTTGTTAAACTCAGAGAGTTTGCTGAAGAAAATATGGGTCCCATCTTTTTAGGAGGAGGCATTACTTTTAGCAGTAGTGGTAGCACTGGACCTTCCCCCAACCACAGTGAAGCTTCTATGCAGCAGGATGTGATGAGCGACCCACAACTTGTAAATTCAGGAAGCTCAATAAGTCCACCAACTTCATCAACTGCAACAGAAGAAAATCCTTAA 2412 0.4337 MWKGSRKGGGGGGGGGGNGLVAVAIDKDKGSQYALKWAADNLLNRGQTLILIHVSLVAGTTSASSRGCEAAIICNVSSTSAASSPQRNQLDNATKDLFLTFHCYCTRKDIQCLDVLLEDTDVVKAITEYVSHAAIENLVIGSPSRHGFIRCVRFKSSSTPSSISKGAPDFCNVFVISKGKISSVRNSSRPAPHTSPLLSHIHNNINNQDLNQSADQICSRRMNLRDRTSMKPHGWHDESTKSPFRRGGRGTSGMLCVDFTESDTDISFVSSGRPSSARSSSVYDYIDSGRTSRVSTSSDRSFGSNRLGIKFTEPGSPDTSFSQDTSRTSFSYSSQNMDETEADMRRLKLELKQTMEMYNTACREALTAQHKLMEMSNWKIEEEKKLEESQLSQEAALAIAEKEKARSKAAMETAAAARKIANVESHRKSSVPVKSLKEAEDMRKLLDNLAQTDVRYRRYNIEEIEAATNMFSEKLKIGEGGYGPVYKCYLDHTPVAVKVLSPDAAQGKSQFQQEVDILSCMRHPNLVLLLGACPEYGILVYEYMANGSLEDCLNRKKKGGRVLCWQLRFRIAAEIATGLLFLHQTKPEPLVHRDLKPGNILLDQNYVCKISDVGLARLVPVMAENVTQCHMTSAAGTFCYIDPEYQQTGMLGVKSDVYSLGIIFLQLLTGRHPMGLAHHAEQSIENGTFEEMLDQSLSHWPIQEALTLANIAVNCAQLRRKDRPDLAKVVLPELVKLREFAEENMGPIFLGGGITFSSSGSTGPSPNHSEASMQQDVMSDPQLVNSGSSISPPTSSTATEENP 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04978 803 Coils Coil 337 364 - -
Trre11g04978 803 Pfam Protein kinase domain 472 728 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g04978 803 Pfam Universal stress protein family 21 156 IPR006016 -
Trre11g04978 803 MobiDBLite consensus disorder prediction 289 341 - -
Trre11g04978 803 MobiDBLite consensus disorder prediction 228 250 - -
Trre11g04978 803 SUPERFAMILY Protein kinase-like (PK-like) 455 730 IPR011009 -
Trre11g04978 803 MobiDBLite consensus disorder prediction 757 803 - -
Trre11g04978 803 SMART serkin_6 471 735 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g04978 803 Gene3D Phosphorylase Kinase; domain 1 449 543 - -
Trre11g04978 803 MobiDBLite consensus disorder prediction 315 338 - -
Trre11g04978 803 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 21 151 - -
Trre11g04978 803 MobiDBLite consensus disorder prediction 228 244 - -
Trre11g04978 803 CDD STK_N 20 179 - -
Trre11g04978 803 ProSitePatterns Serine/Threonine protein kinases active-site signature. 590 602 IPR008271 GO:0004672|GO:0006468
Trre11g04978 803 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 443 543 - -
Trre11g04978 803 MobiDBLite consensus disorder prediction 289 305 - -
Trre11g04978 803 Gene3D HUPs 20 176 IPR014729 -
Trre11g04978 803 PANTHER OS02G0152300 PROTEIN 21 789 - -
Trre11g04978 803 Gene3D Transferase(Phosphotransferase) domain 1 544 745 - -
Trre11g04978 803 ProSiteProfiles Protein kinase domain profile. 471 735 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04978 Trre-Chr11 60384138 60388407 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04978 9 782 Receptor kinase-like Gene Family AT1G78940 54.912 0.0 814
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Trre11g04978 Pkinase 4.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04978 - - gmx:100801601 1061.6