Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04975 ATGTGGAAGGGGAGTAGAAAGGGAGGTGGAGGAGGAGGAGGAGGAGGAGGAAATGGATTGGTGGCAGTGGCTATTGACAAAGATAAAGGAAGCCAATACGCTCTCAAATGGGCAGCTGATAATCTTCTCAATAGAGGCCAAACCCTTATTCTAATCCATGTTTCCCTCGTCGCCGGCACCACATCCGCTTCTTCCAGAGGTTGCGAAGCCGCCATTATATGTAACGTCAGCAGTACTTCAGCTGCATCATCTCCACAAAGAAATCAACTTGATAACGCTACCAAGGATCTCTTTCTTACCTTCCATTGCTATTGCACACGCAAAGATATACAATGTCTGGATGTCCTACTTGAAGACACTGATGTTGTCAAAGCAATAACAGAATATGTTTCTCATGCTGCAATTGAGAACTTGGTCATTGGTTCACCGTCAAGGCATGGATTTATTAGGTTTAAGTCATCAAGTACGCCAAGCAGCATATCAAAGGGGGCGCCAGATTTCTGTAATGTTTTTGTCATATCTAAGGGGAAAATCTCATCAGTTCGGAACTCTTCTCGTCCGGCCCCGCATACCTCCCCACTTCTGAGCCATATACATAACAATATAAATAATCAGGATTTAAATCAATCTGCAGATCAGATATGCTCTAGACGTATGAATTTGAGAGACAGGACGTCGATGAAACCTCACGGTTGGCATGATGAATCCACAAAATCTCCATTTAGAAGAGGAGGAAGAGGCACGAGTGGAATGTTATGTGTAGACTTCACAGAATCAGACACAGACATATCATTTGTAAGCTCTGGGAGGCCAAGCAGTGCTCGTTCATCCTCTGTTTACGACTACATTGACTCCGGTCGAACTTCACGAGTTTCTACCAGTTCAGATCGCAGCTTTGGATCCAACCGATTGGGAATCAAGTTCACTGAACCCGGTTCCCCAGATACCTCTTTTTCACAAGATACTAGTAGAACATCATTTTCATATTCATCTCAGAACATGGATGAAACAGAAGCTGATATGAGGAGACTGAAGCTTGAGTTAAAACAAACAATGGAAATGTACAATACAGCATGCAGAGAAGCGCTTACAGCACAACACAAGTTAATGGAGATGAGCAACTGGAAAATTGAAGAAGAAAAAAAATTAGAAGAGTCACAACTGTCCCAAGAAGCTGCACTGGCAATAGCCGAGAAAGAGAAAGCAAGAAGTAAGGCAGCCATGGAAACAGCTGCAGCAGCTAGAAAAATAGCAAACGTGGAATCACATAGAAAATCAAGTGTTCCAGTTAAGTCTCTTAAAGAAGCAGAGGACATGAGGAAGCTATTGGATAATTTAGCCCAAACTGATGTAAGATATAGGAGATACAATATTGAGGAGATTGAAGCAGCCACAAACATGTTTTCTGAAAAACTAAAAATTGGGGAAGGTGGTTATGGACCTGTTTATAAATGTTACCTTGATCACACTCCAGTGGCCGTGAAGGTTTTAAGTCCTGATGCGGCTCAAGGGAAATCACAGTTTCAGCAAGAGGTTGACATACTGAGTTGTATGCGCCACCCAAACTTGGTGCTTCTTTTAGGAGCGTGTCCAGAGTATGGTATATTGGTTTATGAATATATGGCGAATGGAAGCTTAGAAGATTGTCTGAATCGAAAAAAGAAGGGTGGTAGGGTTCTGTGTTGGCAGCTGAGGTTTCGGATTGCTGCAGAGATAGCCACGGGCTTGCTATTCCTACATCAGACGAAGCCTGAACCTTTGGTGCACCGTGATTTGAAACCCGGCAACATTTTGCTGGACCAGAATTATGTATGTAAGATTAGTGATGTTGGATTGGCAAGGCTGGTCCCTGTGATGGCTGAAAATGTAACACAGTGTCACATGACATCGGCAGCGGGAACATTCTGTTATATTGATCCCGAGTATCAACAAACAGGAATGCTTGGTGTAAAGTCGGACGTTTATTCTCTGGGGATCATATTTCTACAGTTATTGACTGGAAGACATCCAATGGGATTGGCTCACCATGCTGAACAGTCTATTGAGAATGGCACATTTGAGGAAATGCTTGACCAATCTTTATCGCACTGGCCCATTCAAGAAGCCCTAACCCTTGCAAATATAGCTGTAAATTGTGCACAACTCAGACGAAAAGACCGCCCAGACCTTGCCAAAGTAGTGTTGCCTGAGCTTGTTAAACTCAGAGAGTTTGCTGAAGAAAATATGGGTCCCATCTTTTTAGGAGGAGGCATTACTTTTAGCAGTAGTGGTAGCACTGGACCTTCCCCCAACCACAGTGAAGCTTCTATGCAGCAGGATGTGATGAGCGACCCACAACTTGTAAATTCAGGAAGCTCAATAAGTCCACCAACTTCATCAACTGCAACAGAAGAAAATCCTTAA 2403 0.4332 MWKGSRKGGGGGGGGGGNGLVAVAIDKDKGSQYALKWAADNLLNRGQTLILIHVSLVAGTTSASSRGCEAAIICNVSSTSAASSPQRNQLDNATKDLFLTFHCYCTRKDIQCLDVLLEDTDVVKAITEYVSHAAIENLVIGSPSRHGFIRFKSSSTPSSISKGAPDFCNVFVISKGKISSVRNSSRPAPHTSPLLSHIHNNINNQDLNQSADQICSRRMNLRDRTSMKPHGWHDESTKSPFRRGGRGTSGMLCVDFTESDTDISFVSSGRPSSARSSSVYDYIDSGRTSRVSTSSDRSFGSNRLGIKFTEPGSPDTSFSQDTSRTSFSYSSQNMDETEADMRRLKLELKQTMEMYNTACREALTAQHKLMEMSNWKIEEEKKLEESQLSQEAALAIAEKEKARSKAAMETAAAARKIANVESHRKSSVPVKSLKEAEDMRKLLDNLAQTDVRYRRYNIEEIEAATNMFSEKLKIGEGGYGPVYKCYLDHTPVAVKVLSPDAAQGKSQFQQEVDILSCMRHPNLVLLLGACPEYGILVYEYMANGSLEDCLNRKKKGGRVLCWQLRFRIAAEIATGLLFLHQTKPEPLVHRDLKPGNILLDQNYVCKISDVGLARLVPVMAENVTQCHMTSAAGTFCYIDPEYQQTGMLGVKSDVYSLGIIFLQLLTGRHPMGLAHHAEQSIENGTFEEMLDQSLSHWPIQEALTLANIAVNCAQLRRKDRPDLAKVVLPELVKLREFAEENMGPIFLGGGITFSSSGSTGPSPNHSEASMQQDVMSDPQLVNSGSSISPPTSSTATEENP 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04975 800 Gene3D Transferase(Phosphotransferase) domain 1 541 742 - -
Trre11g04975 800 Pfam Protein kinase domain 469 725 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g04975 800 SUPERFAMILY Protein kinase-like (PK-like) 452 727 IPR011009 -
Trre11g04975 800 Coils Coil 334 361 - -
Trre11g04975 800 MobiDBLite consensus disorder prediction 225 247 - -
Trre11g04975 800 CDD STK_N 20 176 - -
Trre11g04975 800 Pfam Universal stress protein family 21 165 IPR006016 -
Trre11g04975 800 MobiDBLite consensus disorder prediction 754 800 - -
Trre11g04975 800 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 440 540 - -
Trre11g04975 800 MobiDBLite consensus disorder prediction 286 336 - -
Trre11g04975 800 PANTHER OS02G0152300 PROTEIN 21 786 - -
Trre11g04975 800 Gene3D HUPs 20 173 IPR014729 -
Trre11g04975 800 Gene3D Phosphorylase Kinase; domain 1 446 540 - -
Trre11g04975 800 ProSiteProfiles Protein kinase domain profile. 468 732 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g04975 800 MobiDBLite consensus disorder prediction 286 302 - -
Trre11g04975 800 ProSitePatterns Serine/Threonine protein kinases active-site signature. 587 599 IPR008271 GO:0004672|GO:0006468
Trre11g04975 800 SMART serkin_6 468 732 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g04975 800 MobiDBLite consensus disorder prediction 225 241 - -
Trre11g04975 800 MobiDBLite consensus disorder prediction 312 335 - -
Trre11g04975 800 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 21 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04975 Trre-Chr11 60384138 60388407 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04975 9 779 Receptor kinase-like Gene Family AT1G78940 54.741 0.0 815
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Trre11g04975 Pkinase 4.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04975 - - gmx:100801601 1066.99