Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04972 ATGAATTTATCAACTGGAAAAGATACAGCTGCTGCAGCTGCTGCTAGATTTATTCATTCATTCATACATACATACATATCCATACCACAAACAACAAGCTGCTGCTACTGTGGGGTCCACCTCTCTTGTATTGCCAAACAACAACAGATACACACAATCACAAGACCTGGCTGTAAGCTTACACAGAGTTGCAGACAGATGGGTTCCGTATCTGCAGATGACAAGATGGACACTGATTTTGATGAAGAAACACCTTTCAGTTCTACTTCACCTTCATCATCTTCTTCTTCTGCTCCTCCATCTAAACACACTTTTCATTTCGATTCTTCTGCAGTTACTTTGCCCAAATCATCTTCTTCTTCTTTCTTCAACCATCCTAGGACAAGACGAATCAGTAGGAGTATATATATTGTCTTAATCAAAGCTAAGGTCAACATCTTGCTACCATTTGGTCCCTTGGCCATCTTCCTACATTATTTCACCGGAAAACATGTTTGGGTTTTCTTCTTCGCTTTATTGGGTATTGCTCCTTTGGCTGAACGCCTTGGTTATGCTACCGAACAGCTTGCGTTTTACACGGGACCAACAGTTGGGGGCTTGCTTAATGCCACGTTTGGAAATGCAACTGAAATGATTATATCTATTTACGCATTGAAAAGCGATATGATTAGAGTCGTTCAACAATCTTTACTTGGTTCAATCTTGTCAAATATGCTTCTAGTTCTTGGTTGTGCATTCTTTACTGGCGGGATTGTCCACTACAAAAAAGTTCAGGTTTTCAATAAGGCAGCTGCTGTTGTTAATTCAGGATTGCTGTTGATGGCTGTAATGGGAATACTATTTCCTGCTGTGCTTCACTTTACTCACTCAGAGGTTCATCGTGGGAAGTCCGAATTATCTCTATCAAGATTTAGCAGCTGCATAATGCTAGTGGCCTATGCAAGCTACCTTTTCTTTCAACTTAGAAGTCAACAAAATTTTTATAGTGCAATTGATGAGGAAGTAGATACATGTGAAAACTCTGACGAGGAGGAAGAACTTGAGTTAACTAAATGGGAAGCGATAATCTGGCTTGCTATTTTGACAGTATGGGTATCGGTATTGTCTGGATACCTTGTGGATGCCATAGAGGGAGCATCTGAATCATTGAATATGTCAGTGGCTTTTATTAGTGTCATCTTGCTTCCAATAGTAGGAAATGCTGCAGAGCATGCAAGTGCTATCATGTTTGCCGTAAAGGACAAGCTAGATATCACAATTGGAGTTGCTGTTGGATCATCAACCCAAATATCGATGTTTGTGATACCCTTCTGTGTGGTTGTTGGATGGTGCATGGGAAAAGATATGGATTTGAATTTTCAACTCTTTGAGACTGCCACACTTTTTATCACTGTGCTGGTAGTTGCATTTATGATGCAGGAAGGGACATCAAACTATTTTAAAGGCTTGATGCTTATTCTATGCTATCTTATAGTTGCTGCCAGTTTTTTCGTACATGTAGACCCTAAAAGTGGTGATGACTAA 1524 0.3996 MNLSTGKDTAAAAAARFIHSFIHTYISIPQTTSCCYCGVHLSCIAKQQQIHTITRPGCKLTQSCRQMGSVSADDKMDTDFDEETPFSSTSPSSSSSSAPPSKHTFHFDSSAVTLPKSSSSSFFNHPRTRRISRSIYIVLIKAKVNILLPFGPLAIFLHYFTGKHVWVFFFALLGIAPLAERLGYATEQLAFYTGPTVGGLLNATFGNATEMIISIYALKSDMIRVVQQSLLGSILSNMLLVLGCAFFTGGIVHYKKVQVFNKAAAVVNSGLLLMAVMGILFPAVLHFTHSEVHRGKSELSLSRFSSCIMLVAYASYLFFQLRSQQNFYSAIDEEVDTCENSDEEEELELTKWEAIIWLAILTVWVSVLSGYLVDAIEGASESLNMSVAFISVILLPIVGNAAEHASAIMFAVKDKLDITIGVAVGSSTQISMFVIPFCVVVGWCMGKDMDLNFQLFETATLFITVLVVAFMMQEGTSNYFKGLMLILCYLIVAASFFVHVDPKSGDD 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04972 507 Pfam Sodium/calcium exchanger protein 164 321 IPR004837 GO:0016020|GO:0055085
Trre11g04972 507 Pfam Sodium/calcium exchanger protein 355 494 IPR004837 GO:0016020|GO:0055085
Trre11g04972 507 MobiDBLite consensus disorder prediction 71 102 - -
Trre11g04972 507 FunFam Vacuolar cation/proton exchanger 195 334 - -
Trre11g04972 507 Gene3D - 341 498 IPR044880 -
Trre11g04972 507 Gene3D - 195 336 IPR044880 -
Trre11g04972 507 MobiDBLite consensus disorder prediction 83 102 - -
Trre11g04972 507 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 96 502 IPR004713 GO:0006812|GO:0008324|GO:0016020
Trre11g04972 507 FunFam Vacuolar cation/proton exchanger 342 498 - -
Trre11g04972 507 NCBIfam calcium/proton exchanger 138 497 - -
Trre11g04972 507 NCBIfam calcium/proton exchanger 147 497 IPR004798 GO:0006816|GO:0015369
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04972 Trre-Chr11 60346411 60353870 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04972 117 502 Antiporters AT3G13320 74.103 0.0 580
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04972 K07300 - gmx:100806000 682.559