Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04971 ATGGCAGCATCACAACAACAAGAAGAAATAATATTCAGGTCTAAACTTCCAGACATATACATCCCAAAACACCTTCCCCTCCATTCTTATTGCTTTGAAAATCTCTCCCAATTTGGTTCTCGTCCATGTCTCATCAATGCACCCACCGGAAAAGTCTACACCTACCACGACGTCGAACTCACCTCTCGGAAAGTTGCCTCCGGTCTCAACAAATTGGGAGTCCAACAGGGTGATGTGATCATGATCCTCCTCCCCAATTCCCCTGAATTCGTCTTCTCCTTTCTGGCAGCTTCTTATCTCGGCGCCATAGCCACAGCAGCCAATCCTTTCTTCATGGCCGCGGAGATTGGAAAGCAAGCAAAAGCCTCCAACGCCAAGTTGATCATAACACAGGCATGTTACTACGACAAAGTCAAGGAGTTGTTGTTGTTGTTGGACAACCACAACAACAACAACAAGAAGAAGTTGGTACTCATAGACTCTCTCCCTCCCTCTACCACCACCACAGAAGAAGAAGAAGAAGAAGATGGTAATCATGTTCATTTCTCGACACTGATCGATGCTGACGAGAAGGAATTGCCGGCGGATGTGAAGATCGACCCTGACGATGTGGTGGCGCTTCCCTATTCATCAGGGACAACCGGTCTGCCAAAAGGGGTGATGTTAACACACAAGGGATTGGTGAGCAGCATAGCGCAGCAGGTAGATGGAGAGAATCCAAATCTATATTACAGCAGTGAAGATGTGATACTGTGTGTGCTTCCTCTGTTTCACATATACTCTCTAAATTCTGTTTTGCTATGTGGACTGAGAGCCAAGGCAAGTATACTTTTGATGCCAAAATTCGACATAAATGGTTTCTTGAGTCTTGTGAACAAACATGGAGTTACAGTTGCACCGGTAGTTCCTCCGATAGTGTTGGCGATTGCAAAGTCGCCGGATCTTAACAAATATGATCTGTCTTCAATAAGGATATTGAAATCAGGAGGTGCTCCACTCGGCAAAGAACTTGAAGACACTGTTAGGAACAAATTTCCCAAAGCAATACTTGGACAGGGATACGGAATGACTGAGGCAGGGCCAGTGTTAACAATGAGCTTAGCATTTGCTAAAGAAGCAGTGAATGTGAAGCCAGGTGCGTGTGGAACGGTTGTAAGAAATGCGGAGATGAAGATTGTGGATCCTGAAACTGGTAATTCTTTACCTAGAAACCAATCTGGTGAAATCTGCATAAGAGGAGACCAGATCATGAAAGGTTATCTAAATGATGTGGAGGCAACTGAGAGAACGATTGACAAAGAAGGTTGGTTGCATACAGGTGATATTGGGTATATTGACGATGACGATGAGTTATTCATTGTTGATAGATTGAAGGAATTGATCAAATACAAAGGATTTCAAGTTGCTCCCGCTGAACTTGAAGCTCTTCTTCTTTCTCATCCCAAAATCTCTGATGCTGCTGTTGTCCCAATGAAGGATGAAGCGGCCGGAGAGGTACCTGTTGCATTTGTTGTGGGATCAAATGGTCACACTGACTTAACCGAGGATGAAATTAAGCACTTTATCTCCAAACAGGTGGTGTTTTACAAAAGAATAAGTCGAGTATTCTTCATTGATGCAATTCCCAAGTCACCTTCAGGCAAAATATTGCGTAAGGATCTCAGAGCAAAGTTAGCAGCAGAATAA 1686 0.4389 MAASQQQEEIIFRSKLPDIYIPKHLPLHSYCFENLSQFGSRPCLINAPTGKVYTYHDVELTSRKVASGLNKLGVQQGDVIMILLPNSPEFVFSFLAASYLGAIATAANPFFMAAEIGKQAKASNAKLIITQACYYDKVKELLLLLDNHNNNNKKKLVLIDSLPPSTTTTEEEEEEDGNHVHFSTLIDADEKELPADVKIDPDDVVALPYSSGTTGLPKGVMLTHKGLVSSIAQQVDGENPNLYYSSEDVILCVLPLFHIYSLNSVLLCGLRAKASILLMPKFDINGFLSLVNKHGVTVAPVVPPIVLAIAKSPDLNKYDLSSIRILKSGGAPLGKELEDTVRNKFPKAILGQGYGMTEAGPVLTMSLAFAKEAVNVKPGACGTVVRNAEMKIVDPETGNSLPRNQSGEICIRGDQIMKGYLNDVEATERTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLLSHPKISDAAVVPMKDEAAGEVPVAFVVGSNGHTDLTEDEIKHFISKQVVFYKRISRVFFIDAIPKSPSGKILRKDLRAKLAAE 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04971 561 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 6 556 - -
Trre11g04971 561 FunFam Long-chain-fatty-acid--CoA ligase FadD 13 458 - -
Trre11g04971 561 Pfam AMP-binding enzyme 33 463 IPR000873 -
Trre11g04971 561 Pfam AMP-binding enzyme C-terminal domain 472 548 IPR025110 -
Trre11g04971 561 SUPERFAMILY Acetyl-CoA synthetase-like 11 560 - -
Trre11g04971 561 CDD 4CL 21 554 - -
Trre11g04971 561 Gene3D - 458 560 IPR045851 -
Trre11g04971 561 FunFam 4-coumarate--CoA ligase 2 459 561 - -
Trre11g04971 561 Gene3D - 4 457 IPR042099 -
Trre11g04971 561 ProSitePatterns Putative AMP-binding domain signature. 207 218 IPR020845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04971 Trre-Chr11 60341297 60344157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04971 3 526 Monolignol Biosynthesis Gene Families AT1G51680 67.871 0.0 689
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04971 K01904 - gmx:547944 871.307